Nematode sequencing summary

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This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.

Last update: 13 June 2008

Genome Sequencing Efforts

Nematode Sequencing Status
Species
Status
Assembly size
Gene count (method)
Download
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C. elegans
finished; Annotated
101 Mb in 6 chromosomes
20,177 (curated)
WormBase
WormBase
C. briggsae
10x draft; Annotated
101 Mb in 6 chromosomes, 7 Mb unassigned
21,558 (Jigsaw)
WormBase
WormBase
C. brenneri 9.5x draft, initial gene calls
191 Mb in 3510 supercontigs
30,557 (Jigsaw)
WormBase
WormBase
C. japonica 6.3x draft, initial gene calls
152 Mb in 4657 supercontigs
15,191 (MGENE)
WormBase
WormBase
C. remanei 9.2x draft, initial gene calls
145 Mb in 3670 supercontigs
31,641 (Jigsaw)
WormBase
WormBase
P. pacificus 8.9x draft, initial gene calls
169 Mb in 5106 supercontigs
29,201 (SNAP)
WashU
www.pristionchus.org
B. malayi 8.9x draft, genes annotated
72 Mb in 3114 supercontigs
18,561 (Augustus)
WormBase
WormBase
Heterorhabditis
* in progress *




T. spiralis
* in progress *





NOTE: Gene counts are very sensitive to the methods used for the prediction as well as the quality of the assembly; the numbers shown represent the best guesses based on the results of the NGASP gene prediction competition.