Difference between revisions of "Nematode sequencing summary"

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(New page: This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.<br> '''Last update: 13 June 2008'''<br> <br> <br> {| cellspacing="1" ce...)
 
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This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.<br>
+
This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.<br>  
  
'''Last update: 13 June 2008'''<br>
+
'''Last update: 13 June 2008'''<br>  
 
 
<br>
 
 
 
<br>
 
  
 
{| cellspacing="1" cellpadding="1" border="1" width="100%"
 
{| cellspacing="1" cellpadding="1" border="1" width="100%"
|+ Nematode Sequencing Status
+
|+ Nematode Sequencing Status  
 
|-
 
|-
| '''Species'''<br>
+
| '''Species'''<br>  
| '''Status'''<br>
+
| '''Status'''<br>  
| '''Assembly size'''<br>
+
| '''Assembly size'''<br>  
| '''Number''' '''genes'''<br>
+
| '''Number''' '''genes'''<br>  
| '''Download'''<br>
+
| '''Download'''<br>  
 
| '''Browser'''<br>
 
| '''Browser'''<br>
 
|-
 
|-
| ''C. elegans''<br>
+
| ''C. elegans''<br>  
| Annotated<br>
+
| finished; Annotated<br>
 +
| 101 Mb in 6 chromosomes<br>
 +
| <br>
 +
| <br>  
 
| <br>
 
| <br>
 +
|-
 +
| ''C. briggsae''<br>
 +
| 10x draft; Annotated<br>
 +
| <br>
 +
| <br>
 +
| <br>
 +
| <br>
 +
|-
 +
| ''C. brenneri''
 +
| 9.5x draft, initial gene calls<br>
 +
| 191 Mb in 3510 supercontigs<br>
 
| <br>
 
| <br>
 
| <br>
 
| <br>
 
| <br>
 
| <br>
 
|-
 
|-
| ''C. briggsae''<br>
+
| ''C. japonica''  
| Annotated<br>
+
| 6.3x draft, initial gene calls<br>
 +
| 152 Mb in 4657 supercontigs<br>
 
| <br>
 
| <br>
 
| <br>
 
| <br>
 
| <br>
 
| <br>
|
 
 
|-
 
|-
| ''C. brenneri''
+
| ''C. remanei''  
| 6.5x draft, initial gene calls
+
| 9.2x draft, initial gene calls<br>
|  
+
| 145 Mb in 3670 supercontigs<br>
|  
+
| <br>
|  
+
| <br>
|  
+
| <br>
 
|-
 
|-
| ''C. japonica''
+
| ''P. pacificus''  
|  
+
| 8.9x draft, initial gene calls <br>
|  
+
| 169 Mb in 5106 supercontigs<br>
|  
+
| <br>
|  
+
| <br>
|  
+
| <br>
 
|-
 
|-
| ''C. remanei''
+
| ''B. malayi''  
|
+
| 8.9x draft, genes annotated<br>
|
+
| <br>
|
+
| <br>
|
+
| <br>
|
+
| <br>
|-
 
| ''P. pacificus''
 
|
 
|
 
|
 
|
 
|
 
|-
 
| ''B. malayi''
 
|  
 
|  
 
|  
 
|  
 
|  
 
 
|}
 
|}
  
 
<br>
 
<br>

Revision as of 17:26, 13 June 2008

This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.

Last update: 13 June 2008

Nematode Sequencing Status
Species
Status
Assembly size
Number genes
Download
Browser
C. elegans
finished; Annotated
101 Mb in 6 chromosomes



C. briggsae
10x draft; Annotated




C. brenneri 9.5x draft, initial gene calls
191 Mb in 3510 supercontigs



C. japonica 6.3x draft, initial gene calls
152 Mb in 4657 supercontigs



C. remanei 9.2x draft, initial gene calls
145 Mb in 3670 supercontigs



P. pacificus 8.9x draft, initial gene calls
169 Mb in 5106 supercontigs



B. malayi 8.9x draft, genes annotated