Difference between revisions of "Nematode sequencing summary"
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This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.<br> | This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.<br> | ||
− | '''Last update: 13 June 2008'''<br> | + | '''Last update: 13 June 2008'''<br> |
+ | |||
+ | = Genome Sequencing Efforts<br> = | ||
{| cellspacing="1" cellpadding="1" border="1" width="100%" | {| cellspacing="1" cellpadding="1" border="1" width="100%" | ||
− | |+ Nematode Sequencing Status | + | |+ '''Nematode Sequencing Status''' |
− | |- style="background:burlywood" | + | |- style="background: burlywood none repeat scroll 0% 0%; -moz-background-clip: -moz-initial; -moz-background-origin: -moz-initial; -moz-background-inline-policy: -moz-initial;" |
| '''Species'''<br> | | '''Species'''<br> | ||
| '''Status'''<br> | | '''Status'''<br> | ||
| '''Assembly size'''<br> | | '''Assembly size'''<br> | ||
− | | ''' | + | | '''Gene count''' '''(method)'''<br> |
| '''Download'''<br> | | '''Download'''<br> | ||
| '''Browser'''<br> | | '''Browser'''<br> | ||
Line 77: | Line 79: | ||
|} | |} | ||
− | <br> | + | <br> |
+ | |||
+ | '''NOTE: '''Gene counts are very sensitive to the methods used for the prediction as well as the quality of the assembly; the numbers shown represent the best guesses based on the results of the [[NGASP|NGASP gene prediction competition]].<br> |
Revision as of 19:28, 13 June 2008
This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.
Last update: 13 June 2008
Genome Sequencing Efforts
Species |
Status |
Assembly size |
Gene count (method) |
Download |
Browser |
C. elegans |
finished; Annotated |
101 Mb in 6 chromosomes |
20,177 (curated) |
WormBase |
WormBase |
C. briggsae |
10x draft; Annotated |
101 Mb in 6 chromosomes, 7 Mb unassigned |
21,558 (Jigsaw) |
WormBase |
WormBase |
C. brenneri | 9.5x draft, initial gene calls |
191 Mb in 3510 supercontigs |
30,557 (Jigsaw) |
WormBase |
WormBase |
C. japonica | 6.3x draft, initial gene calls |
152 Mb in 4657 supercontigs |
15,191 (MGENE) |
WormBase |
WormBase |
C. remanei | 9.2x draft, initial gene calls |
145 Mb in 3670 supercontigs |
31,641 (Jigsaw) |
WormBase |
WormBase |
P. pacificus | 8.9x draft, initial gene calls |
169 Mb in 5106 supercontigs |
29,201 (SNAP) |
WashU |
www.pristionchus.org |
B. malayi | 8.9x draft, genes annotated |
72 Mb in 3114 supercontigs |
18,561 (Augustus) |
WormBase |
WormBase |
Heterorhabditis |
* in progress * |
||||
T. spiralis |
* in progress * |
NOTE: Gene counts are very sensitive to the methods used for the prediction as well as the quality of the assembly; the numbers shown represent the best guesses based on the results of the NGASP gene prediction competition.