Difference between revisions of "Nematode sequencing summary"
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| '''Status'''<br> | | '''Status'''<br> | ||
| '''Assembly size'''<br> | | '''Assembly size'''<br> | ||
| − | | ''' | + | | '''G''''''ene count''' '''(method)'''<br> |
| '''Download'''<br> | | '''Download'''<br> | ||
| '''Browser'''<br> | | '''Browser'''<br> | ||
| Line 16: | Line 16: | ||
| finished; Annotated<br> | | finished; Annotated<br> | ||
| 101 Mb in 6 chromosomes<br> | | 101 Mb in 6 chromosomes<br> | ||
| − | | <br> | + | | 20,177 (curated)<br> |
| − | | <br> | + | | [ftp://ftp.wormbase.org/pub/wormbase/genomes/elegans/ WormBase]<br> |
| − | | <br> | + | | [http://www.wormbase.org/db/seq/gbrowse/elegans/ WormBase]<br> |
|- | |- | ||
| ''C. briggsae''<br> | | ''C. briggsae''<br> | ||
| 10x draft; Annotated<br> | | 10x draft; Annotated<br> | ||
| − | | <br> | + | | 101 Mb in 6 chromosomes, 7 Mb unassigned<br> |
| − | | <br> | + | | 21,558 (Jigsaw)<br> |
| − | | <br> | + | | [ftp://ftp.wormbase.org/pub/wormbase/genomes/briggsae/ WormBase]<br> |
| − | | <br> | + | | [http://www.wormbase.org/db/seq/gbrowse/briggsae/ WormBase]<br> |
|- | |- | ||
| ''C. brenneri'' | | ''C. brenneri'' | ||
| − | | 9.5x draft, initial gene calls<br> | + | | 9.5x draft, initial gene calls<br> |
| − | | 191 Mb in 3510 supercontigs<br> | + | | 191 Mb in 3510 supercontigs<br> |
| − | | <br> | + | | 30,557 (Jigsaw)<br> |
| − | | <br> | + | | [ftp://ftp.wormbase.org/pub/wormbase/genomes/brenneri/ WormBase]<br> |
| − | | <br> | + | | [http://www.wormbase.org/db/seq/gbrowse/brenneri/ WormBase]<br> |
|- | |- | ||
| ''C. japonica'' | | ''C. japonica'' | ||
| − | | 6.3x draft, initial gene calls<br> | + | | 6.3x draft, initial gene calls<br> |
| − | | 152 Mb in 4657 supercontigs<br> | + | | 152 Mb in 4657 supercontigs<br> |
| − | | <br> | + | | 15,191 (MGENE)<br> |
| − | | <br> | + | | [ftp://ftp.wormbase.org/pub/wormbase/genomes/japonica/ WormBase]<br> |
| − | | <br> | + | | [http://www.wormbase.org/db/seq/gbrowse/japonica/ WormBase]<br> |
|- | |- | ||
| ''C. remanei'' | | ''C. remanei'' | ||
| − | | 9.2x draft, initial gene calls<br> | + | | 9.2x draft, initial gene calls<br> |
| − | | 145 Mb in 3670 supercontigs<br> | + | | 145 Mb in 3670 supercontigs<br> |
| − | | <br> | + | | 31,641 (Jigsaw)<br> |
| − | | <br> | + | | [ftp://ftp.wormbase.org/pub/wormbase/genomes/remanei/ WormBase]<br> |
| − | | <br> | + | | [http://www.wormbase.org/db/seq/gbrowse/remanei/ WormBase]<br> |
|- | |- | ||
| ''P. pacificus'' | | ''P. pacificus'' | ||
| − | | 8.9x draft, initial gene calls <br> | + | | 8.9x draft, initial gene calls <br> |
| − | | 169 Mb in 5106 supercontigs<br> | + | | 169 Mb in 5106 supercontigs<br> |
| + | | 29,201 (SNAP)<br> | ||
| + | | [http://genome.wustl.edu/pub/organism/Invertebrates/Pristionchus_pacificus/ WashU]<br> | ||
| + | | [http://www.pristionchus.org/cgi-bin/genome.pl www.pristionchus.org]<br> | ||
| + | |- | ||
| + | | ''B. malayi'' | ||
| + | | 8.9x draft, genes annotated<br> | ||
| + | | 72 Mb in 3114 supercontigs<br> | ||
| + | | 18,561 (Augustus)<br> | ||
| + | | [ftp://ftp.wormbase.org/pub/wormbase/genomes/brugia/ WormBase]<br> | ||
| + | | [http://www.wormbase.org/db/seq/gbrowse/brugia/ WormBase]<br> | ||
| + | |- | ||
| + | | ''Heterorhabditis''<br> | ||
| + | | * in progress *<br> | ||
| + | | <br> | ||
| <br> | | <br> | ||
| <br> | | <br> | ||
| <br> | | <br> | ||
|- | |- | ||
| − | | '' | + | | ''T. spiralis''<br> |
| − | | | + | | * in progress *<br> |
| <br> | | <br> | ||
| <br> | | <br> | ||
Revision as of 19:23, 13 June 2008
This page summarizes the sequencing efforts on nematode genomes. It is a work in progress and is not definitive.
Last update: 13 June 2008
| Species |
Status |
Assembly size |
'G'ene count (method) |
Download |
Browser |
| C. elegans |
finished; Annotated |
101 Mb in 6 chromosomes |
20,177 (curated) |
WormBase |
WormBase |
| C. briggsae |
10x draft; Annotated |
101 Mb in 6 chromosomes, 7 Mb unassigned |
21,558 (Jigsaw) |
WormBase |
WormBase |
| C. brenneri | 9.5x draft, initial gene calls |
191 Mb in 3510 supercontigs |
30,557 (Jigsaw) |
WormBase |
WormBase |
| C. japonica | 6.3x draft, initial gene calls |
152 Mb in 4657 supercontigs |
15,191 (MGENE) |
WormBase |
WormBase |
| C. remanei | 9.2x draft, initial gene calls |
145 Mb in 3670 supercontigs |
31,641 (Jigsaw) |
WormBase |
WormBase |
| P. pacificus | 8.9x draft, initial gene calls |
169 Mb in 5106 supercontigs |
29,201 (SNAP) |
WashU |
www.pristionchus.org |
| B. malayi | 8.9x draft, genes annotated |
72 Mb in 3114 supercontigs |
18,561 (Augustus) |
WormBase |
WormBase |
| Heterorhabditis |
* in progress * |
||||
| T. spiralis |
* in progress * |
