Difference between revisions of "NGASP submit"
(New page: == Submitting nGASP gene prediction files == Gene predictions must be submitted by anonymous ftp to ftp.wormbase.org (change directory to ''pub/wormbase/nGASP/incoming'') Pleas...) |
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All files should be compressed into a single tar gzip archive 'NAME_SOFTWARE_DATE.tgz'. The md5sum for this .tgz file should be emailed to [http://www.wormbase.org/db/misc/person?name=WBPerson3833;class=Person '''Tristan Fiedler'''], and receipt confirmed. | All files should be compressed into a single tar gzip archive 'NAME_SOFTWARE_DATE.tgz'. The md5sum for this .tgz file should be emailed to [http://www.wormbase.org/db/misc/person?name=WBPerson3833;class=Person '''Tristan Fiedler'''], and receipt confirmed. | ||
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| + | [[Category:User Guide]] | ||
Latest revision as of 17:55, 16 August 2010
Submitting nGASP gene prediction files
Gene predictions must be submitted by anonymous ftp to ftp.wormbase.org (change directory to pub/wormbase/nGASP/incoming)
Please include all required information (e.g. command-line options, non-nGASP training data) as outlined on the nGASP website in a separate README for each gene prediction set. Filenames should be as follows:
AUTHOR_SOFTWARE_CAT#_V#.gff3
For example, if I ran FGENESH using protein/EST/mRNA data and generated 3 prediction sets using various parameters, the files would be:
FIEDLER_FGENESH_CAT3_V1.gff3
FIEDLER_FGENESH_CAT3_V2.gff3
FIEDLER_FGENESH_CAT3_V3.gff3
FIEDLER_FGENESH_CAT3_V1.README
FIEDLER_FGENESH_CAT3_V2.README
FIEDLER_FGENESH_CAT3_V3.README
tar gzip: FIEDLER_FGENESH_25DEC06.tgz
All files should be compressed into a single tar gzip archive 'NAME_SOFTWARE_DATE.tgz'. The md5sum for this .tgz file should be emailed to Tristan Fiedler, and receipt confirmed.
