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| − | ''links to relevant pages''<br>
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| − | [[Caltech documentation]] <br>
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| − | [[Overview of molecule pages]]<br>
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| − | [[Example molecule pages]]<br>
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| − | ----
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| − | ==Approved model==
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| − | This model addresses the small_molecule class, or part of it, that was discussed in the 2007 WB grant.<br>
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| − | -----<br>
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| − | ///////////////////////////small molecule/chemical/drug ////////////////////////////
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| − | //
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| − | // ?Molecule
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| − | // * metabolites: precursors, intermediates, or end products of a metabolic pathway
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| − | // * monomeric or very small oligomeric nucleic acids (not RNAi primers), e.g. ATP, ADP, cAMP, GTP, trinucleotide repeats??
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| − | // * chemicals/drugs
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| − | // * minerals, ions, salts
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| − | //
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| − | ////////////////////////////////////////////////////////////////////////////////////
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| − | ?Molecule Name ?Text
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| − | Public_name ?Text
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| − | Synonym ?Text
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| − | DB_info Database ?Database ?Database_field ?Accession_number
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| − | Gene_regulation Gene_regulator ?Gene_regulation XREF Molecule_regulator
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| − | Affects_phenotype_of Variation ?Variation #Evidence
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| − | Strain ?Strain #Evidence
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| − | Transgene ?Transgene #Evidence
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| − | RNAi ?RNAi #Evidence
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| − | ///////////////////////////////////////////////////////////////////////////////////
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| − |
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| − | Corresponding changes in touched models
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| − | /////
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| − | ?Phenotype_info Affected_by Molecule ?Molecule #Evidence
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| − | /////
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| − |
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| − | /////
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| − | ?Gene_regulation Regulator Molecule_regulator ?Molecule XREF Gene_regulator #Boolean
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| − | /////
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| − |
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| − | ==Model elements==
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| − | * Name-> MeSH UID
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| − | * Public name -> common name in elegans literature
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| − | * Synonym -> other names, how do we mine these from other DBs?
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| − | * DB_info -> links to entity in other database add following databases to database.ace
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