Difference between revisions of "Model changes to capture and consolidate human disease data"

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Line 21: Line 21:
  Relationships     is_a
  Relationship     is_a ?DO_term
  DB_info    Database  ?Database  ?Database_field  Text //to reference OMIM               
  DB_info    Database  ?Database  ?Database_field  Text //to reference OMIM               
  Replaced_by        ?DO_term
  Replaced_by        ?DO_term

Revision as of 23:34, 26 November 2012

A new tag ‘Disease_info’ proposed to consolidate disease-related data in WormBase:

DB_info      Database                     ?Database ?Database_field Text
Disease_info Experimental_model_for_human ?DO_term XREF Gene_by_biology #Evidence	            
             Potential_model_for_human	?DO_term  XREF	Gene_by_orthology	#Evidence
             Human_disease_relevance	?Text	#Evidence //moved from ‘structured description’ tag.

Model for Disease Ontology Term:

Name  ?Text
Status UNIQUE      Valid
Alternate_id       ?Text
Definition         ?Text
Comment            Text
Synonymn           ?Text Scope_modifier UNIQUE Broad
Relationship      is_a  ?DO_term
DB_info    Database  ?Database  ?Database_field   Text //to reference OMIM              
Replaced_by        ?DO_term
Subset             Text                  
Created_by         Text
Creation_date      Text             
Attribute_of       Gene_by_biology    ?Gene       XREF   DO_term 
                   Gene_by_orthology  ?Gene       XREF   DO_term
                   Phenotype  ?Phenotype  XREF   DO_term
                   WBProcess  ?WBProcess  XREF   DO_term
                   Reference  ?Paper      XREF   DO_term 
Index   Ancestor   ?DO_term      //Consider transitivity, needed for web display?
        Descendent ?DO_term      //Consider transitivity, needed for web display?
Version UNIQUE Text            //revision number

The Disease Ontology terms reference other resources/databases, these are the ones we may want to include:

Example ID--MSH:D004427