Difference between revisions of "Model changes to capture and consolidate human disease data"
From WormBaseWiki
Jump to navigationJump to search| Line 36: | Line 36: | ||
The Disease Ontology terms reference other resources/databases, these are the ones we may want to include: | The Disease Ontology terms reference other resources/databases, these are the ones we may want to include: | ||
| − | *MeSH | + | *MeSH (Medical Subject Headings), US National Library of Medicine, http://www.nlm.nih.gov/mesh |
| − | Example ID--MSH:D004427 which | + | Example ID--MSH:D004427 which should link to http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi |
| − | + | * | |
| − | * | ||
Revision as of 19:33, 26 November 2012
A new tag ‘Human_disease_info’ proposed to consolidate disease-related data in WormBase:
?Gene
DB_info Database ?Database ?Database_field Text
Disease_info Experimental_model_for ?DO_term XREF Gene #Evidence
Potential_model_for ?DO_term XREF Gene #Evidence
Disease_relevance ?Text #Evidence //moved from ‘structured description’ tag, note name change from 'Human_disease_relevance' to 'Disease_relevance'
Model for Disease Ontology Term:
?DO_term
Name ?Text
Status UNIQUE Valid
Obsolete
Alternate_id ?Text
Definition ?Text
Comment Text
Synonymn ?Text Scope_modifier UNIQUE Broad
Exact
Narrow
Related
Relationships is_a
DB_info Database ?Database ?Database_field Text
Replaced_by ?DO_term
Subset Text
Created_by Text
Creation_date Text
Attribute_of ?Gene XREF DO_term
?Phenotype XREF DO_term
?WBProcess XREF DO_term
Index Ancestor ?DO_term //Consider transitivity, needed for web display?
Descendent ?DO_term //Consider transitivity, needed for web display?
Version UNIQUE Text //revision number
The Disease Ontology terms reference other resources/databases, these are the ones we may want to include:
- MeSH (Medical Subject Headings), US National Library of Medicine, http://www.nlm.nih.gov/mesh
Example ID--MSH:D004427 which should link to http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi
