Difference between revisions of "ModENCODE TilingArray"
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Jump to navigationJump to search| Line 12: | Line 12: | ||
?Condition - [[WormBase_Model:Condition]]: description of an experimental sample used by an microarray experiment. | ?Condition - [[WormBase_Model:Condition]]: description of an experimental sample used by an microarray experiment. | ||
| − | ?Microarray_results - [[WormBase_Model:Microarray_results]]: description of direct results for a 'spot' (TAR?) | + | ?Microarray_results - [[WormBase_Model:Microarray_results]]: description of direct results for a 'spot' (TAR?) per ?Microarray_experiment. |
Use Microarray_results to store TAR. What should be the Sequence_info for a TAR? | Use Microarray_results to store TAR. What should be the Sequence_info for a TAR? | ||
| Line 29: | Line 29: | ||
Remark Text #Evidence | Remark Text #Evidence | ||
| − | Add tag (under "Result") " | + | Add tag (under "Result") "Log2_expression" (of a given TAR of a given Microarray_experiment) |
| + | |||
| + | ?Expression_cluster - [[WormBase_Model:Expression_cluster]]: to group significant ?Microarray_results | ||
[[Category:Curation]] | [[Category:Curation]] | ||
[[Category:Developer documentation]] | [[Category:Developer documentation]] | ||
Revision as of 17:56, 20 January 2011
This is a documentation about how to handle Affymetrix Tiling Array data, esp. from ModEncode.
Tiling Array Related ACeDB Models
?Microarray - WormBase_Model:Microarray: information about a microarray chip.
Existing object - ?Microarray : Affymetrix_C.elegans_Tiling_Array_1.0R
?Microarray_experiment - WormBase_Model:Microarray_experiment: description of an experiment performed using a microarray.
?Condition - WormBase_Model:Condition: description of an experimental sample used by an microarray experiment.
?Microarray_results - WormBase_Model:Microarray_results: description of direct results for a 'spot' (TAR?) per ?Microarray_experiment.
Use Microarray_results to store TAR. What should be the Sequence_info for a TAR?
#Microarray_data Result A_vs_B_log_ratio UNIQUE Float
A_vs_B_SD UNIQUE Float
Frequency UNIQUE Float
Number_of_experiments UNIQUE Int
Range_within_paper UNIQUE Float UNIQUE Float
Confidence Confidence_level UNIQUE Float
P_value UNIQUE Float
Presence UNIQUE PA
PS
NP
Expression_cluster ?Expression_cluster XREF Microarray_results
Remark Text #Evidence
Add tag (under "Result") "Log2_expression" (of a given TAR of a given Microarray_experiment)
?Expression_cluster - WormBase_Model:Expression_cluster: to group significant ?Microarray_results
