Difference between revisions of "ModENCODE TilingArray"
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This is a documentation about how to handle Affymetrix Tiling Array data, esp. from ModEncode. | This is a documentation about how to handle Affymetrix Tiling Array data, esp. from ModEncode. | ||
| − | == | + | == Tiling Array Related ACeDB Models == |
| − | |||
| + | ?Microarray - [[WormBase_Model:Microarray]]: information about a microarray chip. | ||
| + | Existing object - | ||
| + | ?Microarray : [http://wormbase.org/db/misc/etree?name=Affymetrix_C.elegans_Tiling_Array_1.0R;class=Microarray;view=expand Affymetrix_C.elegans_Tiling_Array_1.0R] | ||
| + | |||
| + | ?Microarray_experiment - [[WormBase_Model:Microarray_experiment]]: description of an experiment performed using a microarray. | ||
| + | |||
| + | ?Condition - [[WormBase_Model:Condition]]: description of an experimental sample used by an microarray experiment. | ||
| − | [[WormBase_Model: | + | ?Microarray_results - [[WormBase_Model:Microarray_results]]: description of direct results for a 'spot' (TAR?) on a microarray from all experiments involving this spot. |
| − | ? | + | Use Microarray_results to model TAR; what is the Sequence_info for a TAR? |
| + | #Microarray_data Result A_vs_B_log_ratio UNIQUE Float | ||
| + | A_vs_B_SD UNIQUE Float | ||
| + | Frequency UNIQUE Float | ||
| + | Number_of_experiments UNIQUE Int | ||
| + | Range_within_paper UNIQUE Float UNIQUE Float | ||
| + | Confidence Confidence_level UNIQUE Float | ||
| + | P_value UNIQUE Float | ||
| + | Presence UNIQUE PA | ||
| + | PS | ||
| + | NP | ||
| + | Expression_cluster ?Expression_cluster XREF Microarray_results | ||
| + | Remark Text #Evidence | ||
Revision as of 21:29, 19 January 2011
This is a documentation about how to handle Affymetrix Tiling Array data, esp. from ModEncode.
Tiling Array Related ACeDB Models
?Microarray - WormBase_Model:Microarray: information about a microarray chip.
Existing object - ?Microarray : Affymetrix_C.elegans_Tiling_Array_1.0R
?Microarray_experiment - WormBase_Model:Microarray_experiment: description of an experiment performed using a microarray.
?Condition - WormBase_Model:Condition: description of an experimental sample used by an microarray experiment.
?Microarray_results - WormBase_Model:Microarray_results: description of direct results for a 'spot' (TAR?) on a microarray from all experiments involving this spot.
Use Microarray_results to model TAR; what is the Sequence_info for a TAR?
#Microarray_data Result A_vs_B_log_ratio UNIQUE Float
A_vs_B_SD UNIQUE Float
Frequency UNIQUE Float
Number_of_experiments UNIQUE Int
Range_within_paper UNIQUE Float UNIQUE Float
Confidence Confidence_level UNIQUE Float
P_value UNIQUE Float
Presence UNIQUE PA
PS
NP
Expression_cluster ?Expression_cluster XREF Microarray_results
Remark Text #Evidence
