Difference between revisions of "ModENCODE"

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(New page: This is a summary of what we need to get out of modENCODE <u>5 main areas</u> The Transcriptome<br> Chromatin Function<br> Histone Variants<br> Regulatory Elements<br> The 3' UTRome<br> ...)
 
 
(10 intermediate revisions by one other user not shown)
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<u>5 main areas</u>
 
<u>5 main areas</u>
  
The Transcriptome<br>
+
The Transcriptome - Gary has been working on the Waterston/Hillier RNAseq data
Chromatin Function<br>
+
<br>
Histone Variants<br>
+
Chromatin Function
Regulatory Elements<br>
+
<br>
The 3' UTRome<br>
+
Histone Variants
 +
<br>
 +
Regulatory Elements
 +
<br>
 +
The 3' UTRome - I will incorporate the UTR objects and the polyA features
 +
<br>
  
Datasets available from modmine:
+
Datasets available from modmine: note, I haven't coded them yet.......
  
{|border="1"
+
{|border="1" style="background:white; color:black"
| title
+
!width="250"|   title
| description
+
|   DCCid
| DCCid
+
!width="250"|   publicReleaseDate
| design
+
!width="250"|   embargoDate
| experimentDate
+
|   PI
| publicReleaseDate
+
|- style="background:green; color:white"
| embargoDate
+
| 3' UTR 454 sequencing pilot - alignments
|-
 
| 3' UTR 454 sequencing pilot - alignments
 
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 992
 
| 992
| transcript_identification_design
 
| Thu Nov 12 00:00:00 GMT 2009
 
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Tue Aug 03 01:00:00 BST 2010
 
| Tue Aug 03 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - L1 - alignments
+
| 3' UTR Staged 454 Sequencing - L1 - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2327
 
| 2327
| transcript_identification_design
 
| Thu Nov 12 00:00:00 GMT 2009
 
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Fri Aug 06 01:00:00 BST 2010
 
| Fri Aug 06 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - L1 - sequences
+
| 3' UTR Staged 454 Sequencing - L1 - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2455
 
| 2455
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - L2 - alignments
+
| 3' UTR Staged 454 Sequencing - L2 - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2328
 
| 2328
| transcript_identification_design
 
| Thu Nov 12 00:00:00 GMT 2009
 
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Fri Aug 06 01:00:00 BST 2010
 
| Fri Aug 06 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - L2 - sequences
+
| 3' UTR Staged 454 Sequencing - L2 - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2456
 
| 2456
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - L3 - alignments
+
| 3' UTR Staged 454 Sequencing - L3 - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2329
 
| 2329
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Tue Aug 03 01:00:00 BST 2010
 
| Tue Aug 03 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - L3 - sequences
+
| 3' UTR Staged 454 Sequencing - L3 - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2457
 
| 2457
| transcript_identification_design
 
| Tue Nov 03 00:00:00 GMT 2009
 
 
| Tue Nov 03 00:00:00 GMT 2009
 
| Tue Nov 03 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - L4 - alignments
+
| 3' UTR Staged 454 Sequencing - L4 - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2330
 
| 2330
| transcript_identification_design
 
| Thu Nov 12 00:00:00 GMT 2009
 
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Fri Aug 06 01:00:00 BST 2010
 
| Fri Aug 06 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - L4 - sequences
+
| 3' UTR Staged 454 Sequencing - L4 - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2458
 
| 2458
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - daf-11 - alignments
+
| 3' UTR Staged 454 Sequencing - daf-11 - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2334
 
| 2334
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Tue Aug 03 01:00:00 BST 2010
 
| Tue Aug 03 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - daf-11 - sequences
+
| 3' UTR Staged 454 Sequencing - daf-11 - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2464
 
| 2464
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - daf-2 - alignments
+
| 3' UTR Staged 454 Sequencing - daf-2 - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2335
 
| 2335
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Tue Aug 03 01:00:00 BST 2010
 
| Tue Aug 03 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - daf-2 - sequences
+
| 3' UTR Staged 454 Sequencing - daf-2 - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2461
 
| 2461
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - daf-7 - alignments
+
| 3' UTR Staged 454 Sequencing - daf-7 - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2336
 
| 2336
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Tue Aug 03 01:00:00 BST 2010
 
| Tue Aug 03 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - daf-7 - sequences
+
| 3' UTR Staged 454 Sequencing - daf-7 - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2462
 
| 2462
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - daf-9 - alignments
+
| 3' UTR Staged 454 Sequencing - daf-9 - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2337
 
| 2337
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Aug 06 01:00:00 BST 2010
 
| Fri Aug 06 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - daf-9 - sequences
+
| 3' UTR Staged 454 Sequencing - daf-9 - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2463
 
| 2463
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - embryo - alignments
+
| 3' UTR Staged 454 Sequencing - embryo - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2331
 
| 2331
| transcript_identification_design
 
| Thu Nov 12 00:00:00 GMT 2009
 
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Fri Aug 06 01:00:00 BST 2010
 
| Fri Aug 06 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - embryo - sequences
+
| 3' UTR Staged 454 Sequencing - embryo - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2465
 
| 2465
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - hermaphrodite adult - alignments
+
| 3' UTR Staged 454 Sequencing - hermaphrodite adult - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2332
 
| 2332
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Tue Aug 03 01:00:00 BST 2010
 
| Tue Aug 03 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - hermaphrodite adult - sequences
+
| 3' UTR Staged 454 Sequencing - hermaphrodite adult - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2460
 
| 2460
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - male adult - alignments
+
| 3' UTR Staged 454 Sequencing - male adult - alignments
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2333
 
| 2333
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Aug 06 01:00:00 BST 2010
 
| Fri Aug 06 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTR Staged 454 Sequencing - male adult - sequences
+
| 3' UTR Staged 454 Sequencing - male adult - sequences
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2459
 
| 2459
| transcript_identification_design
 
| Wed Nov 04 00:00:00 GMT 2009
 
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Wed Nov 04 00:00:00 GMT 2009
 
| Mon Jul 19 01:00:00 BST 2010
 
| Mon Jul 19 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTRome 454 sequencing & alignment
+
| 3' UTRome 454 sequencing & alignment
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2482
 
| 2482
| transcript_identification_design
 
| Mon Nov 16 00:00:00 GMT 2009
 
 
| Mon Nov 16 00:00:00 GMT 2009
 
| Mon Nov 16 00:00:00 GMT 2009
 
| Mon Aug 09 01:00:00 BST 2010
 
| Mon Aug 09 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTRome Solexa sequencing & alignment
+
| 3' UTRome Solexa sequencing & alignment
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2484
 
| 2484
| transcript_identification_design
 
| Mon Nov 16 00:00:00 GMT 2009
 
 
| Mon Nov 16 00:00:00 GMT 2009
 
| Mon Nov 16 00:00:00 GMT 2009
 
| Mon Aug 09 01:00:00 BST 2010
 
| Mon Aug 09 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3' UTRome sample pools
+
| 3' UTRome sample pools
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2501
 
| 2501
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Mon Aug 09 01:00:00 BST 2010
 
| Mon Aug 09 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3'UTR 454 sequencing pilot - Level 1
+
| 3'UTR 454 sequencing pilot - Level 1
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 896
 
| 896
| transcript_identification_design
 
| Tue Nov 03 00:00:00 GMT 2009
 
 
| Tue Nov 03 00:00:00 GMT 2009
 
| Tue Nov 03 00:00:00 GMT 2009
 
| Fri Jun 04 01:00:00 BST 2010
 
| Fri Jun 04 01:00:00 BST 2010
|
+
| Fabio Piano
|-
+
|- style="background:green; color:white"
| 3'UTRome CEUP1 sequences, alignments, annotation
+
| 3'UTRome CEUP1 sequences, alignments, annotation
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 515
 
| 515
| transcript_identification_design
 
| Mon Nov 16 00:00:00 GMT 2009
 
 
| Mon Nov 16 00:00:00 GMT 2009
 
| Mon Nov 16 00:00:00 GMT 2009
 
| Wed Aug 04 01:00:00 BST 2010
 
| Wed Aug 04 01:00:00 BST 2010
|
+
| Fabio Piano
|-
 
|  600_mM_Embryonic_Salt_Extracted_Chromatin
 
| We applied genome-wide profiling to successive salt-extracted fractions of micrococcal nuclease-treated Drosophila chromatin.  Chromatin fractions extracted with 80 mM or 150 mM NaCl after digestion contain predominantly mononucleosomes and represent classical ??active?? chromatin. Profiles of these low-salt soluble fractions display phased nucleosomes over transcriptionally active genes that are locally depleted of histone H3.3 and correspond closely to profiles of histone H2Av (H2A.Z) and RNA polymerase II. This correspondence suggests that transcription can result in loss of H3.3+H2Av nucleosomes and generate low-salt soluble nucleosomes.  Nearly quantitative recovery of chromatin is obtained with 600 mM NaCl; however, the remaining insoluble chromatin is enriched in actively transcribed regions.  Salt-insoluble chromatin likely represents oligonucleosomes that are attached to large protein complexes. Both low-salt extracted and insoluble chromatin are rich in sequences that correspond to epigenetic regulatory elements genome-wide. The presence of active chromatin at both extremes of salt solubility suggests that these salt fractions capture bound and
 
 
|-
 
|-
| unbound intermediates in active processes, thus providing a simple, powerful strategy for mapping epigenome dynamics.
+
| 600_mM_Embryonic_Salt_Extracted_Chromatin
 
| 2532
 
| 2532
| binding_site_identification_design
 
| Mon Dec 15 00:00:00 GMT 2008
 
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Fri Aug 27 01:00:00 BST 2010
 
| Fri Aug 27 01:00:00 BST 2010
|
 
|-
 
|  600_mM_Embryonic_Salt_Extracted_Chromatin_Pellet
 
| We applied genome-wide profiling to successive salt-extracted fractions of micrococcal nuclease-treated Drosophila chromatin.  Chromatin fractions extracted with 80 mM or 150 mM NaCl after digestion contain predominantly mononucleosomes and represent classical ??active?? chromatin. Profiles of these low-salt soluble fractions display phased nucleosomes over transcriptionally active genes that are locally depleted of histone H3.3 and correspond closely to profiles of histone H2Av (H2A.Z) and RNA polymerase II. This correspondence suggests that transcription can result in loss of H3.3+H2Av nucleosomes and generate low-salt soluble nucleosomes.  Nearly quantitative recovery of chromatin is obtained with 600 mM NaCl; however, the remaining insoluble chromatin is enriched in actively transcribed regions.  Salt-insoluble chromatin likely represents oligonucleosomes that are attached to large protein complexes. Both low-salt extracted and insoluble chromatin are rich in sequences that correspond to epigenetic regulatory elements genome-wide. The presence of active chromatin at both extremes of salt solubility suggests that these salt fractions capture bound and
 
 
|-
 
|-
| unbound intermediates in active processes, thus providing a simple, powerful strategy for mapping epigenome dynamics.
+
| 600_mM_Embryonic_Salt_Extracted_Chromatin_Pellet
 
| 2533
 
| 2533
| binding_site_identification_design
 
| Mon Dec 15 00:00:00 GMT 2008
 
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Fri Aug 27 01:00:00 BST 2010
 
| Fri Aug 27 01:00:00 BST 2010
|
 
 
|-
 
|-
| 80_mM_Embryonic_Salt_Extracted_Chromatin
+
| 80_mM_Embryonic_Salt_Extracted_Chromatin
| We applied genome-wide profiling to successive salt-extracted fractions of micrococcal nuclease-treated Drosophila chromatin.  Chromatin fractions extracted with 80 mM or 150 mM NaCl after digestion contain predominantly mononucleosomes and represent classical ??active?? chromatin. Profiles of these low-salt soluble fractions display phased nucleosomes over transcriptionally active genes that are locally depleted of histone H3.3 and correspond closely to profiles of histone H2Av (H2A.Z) and RNA polymerase II. This correspondence suggests that transcription can result in loss of H3.3+H2Av nucleosomes and generate low-salt soluble nucleosomes.  Nearly quantitative recovery of chromatin is obtained with 600 mM NaCl; however, the remaining insoluble chromatin is enriched in actively transcribed regions.  Salt-insoluble chromatin likely represents oligonucleosomes that are attached to large protein complexes. Both low-salt extracted and insoluble chromatin are rich in sequences that correspond to epigenetic regulatory elements genome-wide. The presence of active chromatin at both extremes of salt solubility suggests that these salt fractions capture bound and
 
|-
 
|  unbound intermediates in active processes, thus providing a simple, powerful strategy for mapping epigenome dynamics.
 
 
| 2531
 
| 2531
| binding_site_identification_design
 
| Mon Dec 15 00:00:00 GMT 2008
 
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Fri Aug 27 01:00:00 BST 2010
 
| Fri Aug 27 01:00:00 BST 2010
|
 
 
|-
 
|-
| Adult spe-9 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| Adult spe-9 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2850
 
| 2850
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
|
 
|-
 
|  Adult_Mononucleosomes
 
| We applied genome-wide profiling to successive salt-extracted fractions of micrococcal nuclease-treated Drosophila chromatin.  Chromatin fractions extracted with 80 mM or 150 mM NaCl after digestion contain predominantly mononucleosomes and represent classical ??active?? chromatin. Profiles of these low-salt soluble fractions display phased nucleosomes over transcriptionally active genes that are locally depleted of histone H3.3 and correspond closely to profiles of histone H2Av (H2A.Z) and RNA polymerase II. This correspondence suggests that transcription can result in loss of H3.3+H2Av nucleosomes and generate low-salt soluble nucleosomes.  Nearly quantitative recovery of chromatin is obtained with 600 mM NaCl; however, the remaining insoluble chromatin is enriched in actively transcribed regions.  Salt-insoluble chromatin likely represents oligonucleosomes that are attached to large protein complexes. Both low-salt extracted and insoluble chromatin are rich in sequences that correspond to epigenetic regulatory elements genome-wide. The presence of active chromatin at both extremes of salt solubility suggests that these salt fractions capture bound and
 
 
|-
 
|-
| unbound intermediates in active processes, thus providing a simple, powerful strategy for mapping epigenome dynamics.
+
| Adult_Mononucleosomes
 
| 2538
 
| 2538
| binding_site_identification_design
 
| Mon Dec 15 00:00:00 GMT 2008
 
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Fri Aug 27 01:00:00 BST 2010
 
| Fri Aug 27 01:00:00 BST 2010
|
 
 
|-
 
|-
| Ahringer_L3_Worm_Samples_1
+
| Ahringer_L3_Worm_Samples_1
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2539
 
| 2539
| development_or_differentiation_design
 
| Fri Jul 10 01:00:00 BST 2009
 
 
| Mon Aug 10 01:00:00 BST 2009
 
| Mon Aug 10 01:00:00 BST 2009
 
| Sun Aug 29 01:00:00 BST 2010
 
| Sun Aug 29 01:00:00 BST 2010
|
 
|-
 
|  Ahringer_L3_Worm_Samples_2
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Ahringer_L3_Worm_Samples_2
 
| 2540
 
| 2540
| development_or_differentiation_design
 
| Fri Jul 10 01:00:00 BST 2009
 
 
| Mon Aug 10 01:00:00 BST 2009
 
| Mon Aug 10 01:00:00 BST 2009
 
| Mon Aug 30 01:00:00 BST 2010
 
| Mon Aug 30 01:00:00 BST 2010
|
 
|-
 
|  C. elegans Intron Identification set.20090106.2_3_2_2_4_3_3_2_2
 
| This experiment identifies intron boundary coordinates in C. elegans
 
|-
 
|  genomic sequence. Initially, we run genefinder to predict protein-coding
 
|-
 
|  transcripts from the C. elegans chromosome sequences. We align
 
|-
 
|  existing cDNA and EST sequences to the predicted transcript sequences
 
|-
 
|  to confirm the transcript structure. Predicted splice junctions
 
|-
 
|  unconfirmed by these alignments are tested for confirmation using
 
|-
 
|  RT-PCR, DNA sequencing, and sequence alignment. These PCR experiments
 
 
|-
 
|-
| use gene-specific/gene-specific, 5' RACE/gene-specific, and
+
| C. elegans Intron Identification set.20090106.2_3_2_2_4_3_3_2_2
|-
 
|  gene-specific/3' RACE primer pairs.
 
 
| 448
 
| 448
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Sun Oct 25 01:00:00 BST 2009
 
| Sun Oct 25 01:00:00 BST 2009
|
 
 
|-
 
|-
| C. elegans Intron Identification set.20090106.2_3_2_2_4_4_3_2_2
+
| C. elegans Intron Identification set.20090106.2_3_2_2_4_4_3_2_2
| This experiment identifies intron boundary coordinates in C. elegans
 
|-
 
|  genomic sequence. Initially, we run genefinder to predict protein-coding
 
|-
 
|  transcripts from the C. elegans chromosome sequences. We align
 
|-
 
|  existing cDNA and EST sequences to the predicted transcript sequences
 
|-
 
|  to confirm the transcript structure. Predicted splice junctions
 
|-
 
|  unconfirmed by these alignments are tested for confirmation using
 
|-
 
|  RT-PCR, DNA sequencing, and sequence alignment. These PCR experiments
 
|-
 
|  use gene-specific/gene-specific, 5' RACE/gene-specific, and
 
|-
 
|  gene-specific/3' RACE primer pairs.
 
 
| 446
 
| 446
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Sun Oct 25 01:00:00 BST 2009
 
| Sun Oct 25 01:00:00 BST 2009
|
 
|-
 
|  C. elegans Intron Identification set.20090106.2_3_2_2_5_3_3_2_2
 
| This experiment identifies intron boundary coordinates in C. elegans
 
 
|-
 
|-
| genomic sequence. Initially, we run genefinder to predict protein-coding
+
| C. elegans Intron Identification set.20090106.2_3_2_2_5_3_3_2_2
|-
 
|  transcripts from the C. elegans chromosome sequences. We align
 
|-
 
|  existing cDNA and EST sequences to the predicted transcript sequences
 
|-
 
|  to confirm the transcript structure. Predicted splice junctions
 
|-
 
|  unconfirmed by these alignments are tested for confirmation using
 
|-
 
|  RT-PCR, DNA sequencing, and sequence alignment. These PCR experiments
 
|-
 
|  use gene-specific/gene-specific, 5' RACE/gene-specific, and
 
|-
 
|  gene-specific/3' RACE primer pairs.
 
 
| 447
 
| 447
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Sat Oct 31 00:00:00 GMT 2009
 
| Sat Oct 31 00:00:00 GMT 2009
|
 
 
|-
 
|-
| C. elegans Intron Identification.set.20090106.2_3_2_2_3_2_2_2_2
+
| C. elegans Intron Identification.set.20090106.2_3_2_2_3_2_2_2_2
| This experiment identifies intron boundary coordinates in C. elegans
 
|-
 
|  genomic sequence. Initially, we run genefinder to predict protein-coding
 
|-
 
|  transcripts from the C. elegans chromosome sequences. We align
 
|-
 
|  existing cDNA and EST sequences to the predicted transcript sequences
 
|-
 
|  to confirm the transcript structure. Predicted splice junctions
 
|-
 
|  unconfirmed by these alignments are tested for confirmation using
 
|-
 
|  RT-PCR, DNA sequencing, and sequence alignment. These PCR experiments
 
|-
 
|  use gene-specific/gene-specific, 5' RACE/gene-specific, and
 
|-
 
|  gene-specific/3' RACE primer pairs.
 
 
| 445
 
| 445
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Sun Oct 25 01:00:00 BST 2009
 
| Sun Oct 25 01:00:00 BST 2009
|
 
 
|-
 
|-
| CBP-1_N2_MXEMB_(SDQ3582_CBP1_N2_MXEMB)
+
| CBP-1_N2_MXEMB_(SDQ3582_CBP1_N2_MXEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2767
 
| 2767
| binding_site_identification_design
 
| Wed Jan 13 00:00:00 GMT 2010
 
 
| Mon Feb 01 00:00:00 GMT 2010
 
| Mon Feb 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
|-
 
|  DPY-26_N2_Mixed_Embryos_(JL00003_DPY26_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| DPY-26_N2_Mixed_Embryos_(JL00003_DPY26_N2_MXEMB)
 
| 334
 
| 334
| binding_site_identification_design
 
| Mon Aug 25 01:00:00 BST 2008
 
 
| Mon Nov 30 00:00:00 GMT 2009
 
| Mon Nov 30 00:00:00 GMT 2009
 
| Mon Aug 23 01:00:00 BST 2010
 
| Mon Aug 23 01:00:00 BST 2010
|
 
|-
 
|  DPY-27_N2_L4(JL00001_DPY27_N2_L4)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| DPY-27_N2_L4(JL00001_DPY27_N2_L4)
 
| 630
 
| 630
| binding_site_identification_design
 
| Thu Nov 26 00:00:00 GMT 2009
 
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  DPY-27_N2_MXEMB_1A_(JL00001_DPY27_N2_MXEMB_1_A)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| DPY-27_N2_MXEMB_1A_(JL00001_DPY27_N2_MXEMB_1_A)
 
| 578
 
| 578
| binding_site_identification_design
 
| Fri Nov 27 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| DPY-27_N2_Mixed_Embryos (JL00001_DPY27_N2_MXEMB)
+
| DPY-27_N2_Mixed_Embryos (JL00001_DPY27_N2_MXEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 90
 
| 90
| binding_site_identification_design
 
| Fri Dec 01 00:00:00 GMT 2006
 
 
| Sun Feb 11 00:00:00 GMT 2007
 
| Sun Feb 11 00:00:00 GMT 2007
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  DPY-28_N2_MXEMB_(JL00012_DPY28_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| DPY-28_N2_MXEMB_(JL00012_DPY28_N2_MXEMB)
 
| 644
 
| 644
| binding_site_identification_design
 
| Thu Nov 26 00:00:00 GMT 2009
 
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| DPY27_11DH(I;X)_MXEMB(JL00001_DPY27_11DH_MXEMB)
+
| DPY27_11DH(I;X)_MXEMB(JL00001_DPY27_11DH_MXEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 693
 
| 693
| binding_site_identification_design
 
| Wed Feb 03 00:00:00 GMT 2010
 
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  DPY27_YPT41(II;X)_MXEMB(JL00001_DPY27_YPT41_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| DPY27_YPT41(II;X)_MXEMB(JL00001_DPY27_YPT41_MXEMB)
 
| 695
 
| 695
| binding_site_identification_design
 
| Wed Feb 03 00:00:00 GMT 2010
 
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  DPY27_YPT47(V;X)_MXEMB(JL00001_DPY27_YPT47_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| DPY27_YPT47(V;X)_MXEMB(JL00001_DPY27_YPT47_MXEMB)
 
| 696
 
| 696
| binding_site_identification_design
 
| Thu Nov 26 00:00:00 GMT 2009
 
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Day0_spe-9 Solexa Raw Data SOAP-aligned
+
| Day0_spe-9 Solexa Raw Data SOAP-aligned
| We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression during aging in C. elegans. RNAs were prepared from four diffrent timepoints during adulthood of C. elegans hermaphrodites, Day 0, 5, 8 and 12 post-L4 molt, and used for making cDNA libraries for small RNAs. Each library was sequenced using recent advances in high-throughput sequencing technology, Solexa. This study should lead to a better understanding of the aging process and age-related diseases.
 
 
| 2730
 
| 2730
| transcript_identification_design
 
| Sat Feb 13 00:00:00 GMT 2010
 
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Day12_spe-9 Solexa Raw Data SOAP-aligned
+
| Day12_spe-9 Solexa Raw Data SOAP-aligned
| We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression during aging in C. elegans. RNAs were prepared from four diffrent timepoints during adulthood of C. elegans hermaphrodites, Day 0, 5, 8 and 12 post-L4 molt, and used for making cDNA libraries for small RNAs. Each library was sequenced using recent advances in high-throughput sequencing technology, Solexa. This study should lead to a better understanding of the aging process and age-related diseases.
 
 
| 2734
 
| 2734
| transcript_identification_design
 
| Sat Feb 13 00:00:00 GMT 2010
 
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Day12_spe-9_23dC_miRNA_expression_change
+
| Day12_spe-9_23dC_miRNA_expression_change
| We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression during aging in C. elegans. RNAs were prepared from four diffrent timepoints during adulthood of C. elegans hermaphrodites, Day 0, 5, 8 and 12 post-L4 molt, and used for making cDNA libraries for small RNAs. Each library was sequenced using recent advances in high-throughput sequencing technology, Solexa. This study should lead to a better understanding of the aging process and age-related diseases.
 
 
| 2788
 
| 2788
| transcript_identification_design
 
| Sat Feb 13 00:00:00 GMT 2010
 
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Nov 13 00:00:00 GMT 2010
 
| Sat Nov 13 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Day5_spe-9 Solexa Raw Data SOAP-aligned
+
| Day5_spe-9 Solexa Raw Data SOAP-aligned
| We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression during aging in C. elegans. RNAs were prepared from four diffrent timepoints during adulthood of C. elegans hermaphrodites, Day 0, 5, 8 and 12 post-L4 molt, and used for making cDNA libraries for small RNAs. Each library was sequenced using recent advances in high-throughput sequencing technology, Solexa. This study should lead to a better understanding of the aging process and age-related diseases.
 
 
| 2732
 
| 2732
| transcript_identification_design
 
| Sat Feb 13 00:00:00 GMT 2010
 
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Day8_spe-9 Solexa Raw Data SOAP-aligned
+
| Day8_spe-9 Solexa Raw Data SOAP-aligned
| We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression during aging in C. elegans. RNAs were prepared from four diffrent timepoints during adulthood of C. elegans hermaphrodites, Day 0, 5, 8 and 12 post-L4 molt, and used for making cDNA libraries for small RNAs. Each library was sequenced using recent advances in high-throughput sequencing technology, Solexa. This study should lead to a better understanding of the aging process and age-related diseases.
 
 
| 2733
 
| 2733
| transcript_identification_design
 
| Sat Feb 13 00:00:00 GMT 2010
 
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Embryo_miRNA_expression_change
+
| Embryo_miRNA_expression_change
| We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression during aging in C. elegans. RNAs were prepared from four diffrent timepoints during adulthood of C. elegans hermaphrodites, Day 0, 5, 8 and 12 post-L4 molt, and used for making cDNA libraries for small RNAs. Each library was sequenced using recent advances in high-throughput sequencing technology, Solexa. This study should lead to a better understanding of the aging process and age-related diseases.
 
 
| 2776
 
| 2776
| transcript_identification_design
 
| Sat Feb 13 00:00:00 GMT 2010
 
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Nov 13 00:00:00 GMT 2010
 
| Sat Nov 13 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Embryonic_Mononucleosomes
+
| Embryonic_Mononucleosomes
| We applied genome-wide profiling to successive salt-extracted fractions of micrococcal nuclease-treated Drosophila chromatin.  Chromatin fractions extracted with 80 mM or 150 mM NaCl after digestion contain predominantly mononucleosomes and represent classical ??active?? chromatin. Profiles of these low-salt soluble fractions display phased nucleosomes over transcriptionally active genes that are locally depleted of histone H3.3 and correspond closely to profiles of histone H2Av (H2A.Z) and RNA polymerase II. This correspondence suggests that transcription can result in loss of H3.3+H2Av nucleosomes and generate low-salt soluble nucleosomes.  Nearly quantitative recovery of chromatin is obtained with 600 mM NaCl; however, the remaining insoluble chromatin is enriched in actively transcribed regions.  Salt-insoluble chromatin likely represents oligonucleosomes that are attached to large protein complexes. Both low-salt extracted and insoluble chromatin are rich in sequences that correspond to epigenetic regulatory elements genome-wide. The presence of active chromatin at both extremes of salt solubility suggests that these salt fractions capture bound and
 
|-
 
|  unbound intermediates in active processes, thus providing a simple, powerful strategy for mapping epigenome dynamics.
 
 
| 2537
 
| 2537
| binding_site_identification_design
 
| Mon Dec 15 00:00:00 GMT 2008
 
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Fri Aug 27 01:00:00 BST 2010
 
| Fri Aug 27 01:00:00 BST 2010
|
 
|-
 
|  H3.3_350_mM_Salt_Extracted_Chromatin
 
| We applied genome-wide profiling to successive salt-extracted fractions of micrococcal nuclease-treated Drosophila chromatin.  Chromatin fractions extracted with 80 mM or 150 mM NaCl after digestion contain predominantly mononucleosomes and represent classical ??active?? chromatin. Profiles of these low-salt soluble fractions display phased nucleosomes over transcriptionally active genes that are locally depleted of histone H3.3 and correspond closely to profiles of histone H2Av (H2A.Z) and RNA polymerase II. This correspondence suggests that transcription can result in loss of H3.3+H2Av nucleosomes and generate low-salt soluble nucleosomes.  Nearly quantitative recovery of chromatin is obtained with 600 mM NaCl; however, the remaining insoluble chromatin is enriched in actively transcribed regions.  Salt-insoluble chromatin likely represents oligonucleosomes that are attached to large protein complexes. Both low-salt extracted and insoluble chromatin are rich in sequences that correspond to epigenetic regulatory elements genome-wide. The presence of active chromatin at both extremes of salt solubility suggests that these salt fractions capture bound and
 
 
|-
 
|-
| unbound intermediates in active processes, thus providing a simple, powerful strategy for mapping epigenome dynamics.
+
| H3.3_350_mM_Salt_Extracted_Chromatin
 
| 2535
 
| 2535
| binding_site_identification_design
 
| Mon Dec 15 00:00:00 GMT 2008
 
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Fri Aug 27 01:00:00 BST 2010
 
| Fri Aug 27 01:00:00 BST 2010
|
 
|-
 
|  H3.3_600_mM_Salt_Extracted_Chromatin
 
| We applied genome-wide profiling to successive salt-extracted fractions of micrococcal nuclease-treated Drosophila chromatin.  Chromatin fractions extracted with 80 mM or 150 mM NaCl after digestion contain predominantly mononucleosomes and represent classical ??active?? chromatin. Profiles of these low-salt soluble fractions display phased nucleosomes over transcriptionally active genes that are locally depleted of histone H3.3 and correspond closely to profiles of histone H2Av (H2A.Z) and RNA polymerase II. This correspondence suggests that transcription can result in loss of H3.3+H2Av nucleosomes and generate low-salt soluble nucleosomes.  Nearly quantitative recovery of chromatin is obtained with 600 mM NaCl; however, the remaining insoluble chromatin is enriched in actively transcribed regions.  Salt-insoluble chromatin likely represents oligonucleosomes that are attached to large protein complexes. Both low-salt extracted and insoluble chromatin are rich in sequences that correspond to epigenetic regulatory elements genome-wide. The presence of active chromatin at both extremes of salt solubility suggests that these salt fractions capture bound and
 
 
|-
 
|-
| unbound intermediates in active processes, thus providing a simple, powerful strategy for mapping epigenome dynamics.
+
| H3.3_600_mM_Salt_Extracted_Chromatin
 
| 2536
 
| 2536
| binding_site_identification_design
 
| Mon Dec 15 00:00:00 GMT 2008
 
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Fri Aug 27 01:00:00 BST 2010
 
| Fri Aug 27 01:00:00 BST 2010
|
 
 
|-
 
|-
| H3.3_80_mM_Salt_Extracted_Chromatin
+
| H3.3_80_mM_Salt_Extracted_Chromatin
| We applied genome-wide profiling to successive salt-extracted fractions of micrococcal nuclease-treated Drosophila chromatin.  Chromatin fractions extracted with 80 mM or 150 mM NaCl after digestion contain predominantly mononucleosomes and represent classical ??active?? chromatin. Profiles of these low-salt soluble fractions display phased nucleosomes over transcriptionally active genes that are locally depleted of histone H3.3 and correspond closely to profiles of histone H2Av (H2A.Z) and RNA polymerase II. This correspondence suggests that transcription can result in loss of H3.3+H2Av nucleosomes and generate low-salt soluble nucleosomes.  Nearly quantitative recovery of chromatin is obtained with 600 mM NaCl; however, the remaining insoluble chromatin is enriched in actively transcribed regions.  Salt-insoluble chromatin likely represents oligonucleosomes that are attached to large protein complexes. Both low-salt extracted and insoluble chromatin are rich in sequences that correspond to epigenetic regulatory elements genome-wide. The presence of active chromatin at both extremes of salt solubility suggests that these salt fractions capture bound and
 
|-
 
|  unbound intermediates in active processes, thus providing a simple, powerful strategy for mapping epigenome dynamics.
 
 
| 2534
 
| 2534
| binding_site_identification_design
 
| Mon Dec 15 00:00:00 GMT 2008
 
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Sun Nov 29 00:00:00 GMT 2009
 
| Fri Aug 27 01:00:00 BST 2010
 
| Fri Aug 27 01:00:00 BST 2010
|
 
|-
 
|  HCP-3_CENP-A_Mixed_Embryos_(OD00001_HCP3_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| HCP-3_CENP-A_Mixed_Embryos_(OD00001_HCP3_N2_MXEMB)
 
| 194
 
| 194
| binding_site_identification_design
 
| Wed Jul 02 01:00:00 BST 2008
 
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Mon Aug 23 01:00:00 BST 2010
 
| Mon Aug 23 01:00:00 BST 2010
|
 
|-
 
|  HCP-3_CENP-A_N2_EEMB_(OD00079_HCP3_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| HCP-3_CENP-A_N2_EEMB_(OD00079_HCP3_N2_EEMB)
 
| 2541
 
| 2541
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Fri Dec 04 00:00:00 GMT 2009
 
| Fri Dec 04 00:00:00 GMT 2009
 
| Thu Sep 09 01:00:00 BST 2010
 
| Thu Sep 09 01:00:00 BST 2010
|
 
|-
 
|  HCP-3_CENP-A_N2_MXEMB_(OD00079_HCP3_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| HCP-3_CENP-A_N2_MXEMB_(OD00079_HCP3_N2_MXEMB)
 
| 2446
 
| 2446
| binding_site_identification_design
 
| Fri Oct 09 01:00:00 BST 2009
 
 
| Thu Oct 15 01:00:00 BST 2009
 
| Thu Oct 15 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  HTZ-1_N2_Mixed_Embryos (BK00001_HTZ1_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| HTZ-1_N2_Mixed_Embryos (BK00001_HTZ1_N2_MXEMB)
 
| 43
 
| 43
| binding_site_identification_design
 
| Thu Jan 17 00:00:00 GMT 2008
 
 
| Mon Jul 28 01:00:00 BST 2008
 
| Mon Jul 28 01:00:00 BST 2008
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K20me1_N2_EEMB_(AB9051_H4K20ME1104513_N2_EEMB)
+
| Histone_H3K20me1_N2_EEMB_(AB9051_H4K20ME1104513_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2765
 
| 2765
| binding_site_identification_design
 
| Wed Jan 13 00:00:00 GMT 2010
 
 
| Mon Feb 01 00:00:00 GMT 2010
 
| Mon Feb 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Histone_H3K27ac_N2_EEMB_(AB4729_H3K27AC361571_N2_EEMB)
+
| Histone_H3K27ac_N2_EEMB_(AB4729_H3K27AC361571_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2740
 
| 2740
| binding_site_identification_design
 
| Fri Jan 29 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Fri Oct 29 01:00:00 BST 2010
 
| Fri Oct 29 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K27ac_N2_EEMB_(WA30634849_H3K27AC_N2_EEMB)
+
| Histone_H3K27ac_N2_EEMB_(WA30634849_H3K27AC_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2727
 
| 2727
| binding_site_identification_design
 
| Wed Jan 13 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Fri Oct 29 01:00:00 BST 2010
 
| Fri Oct 29 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K27ac_N2_L3_(AB4729_H3K27AC361571_N2_L3)
+
| Histone_H3K27ac_N2_L3_(AB4729_H3K27AC361571_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2771
 
| 2771
| binding_site_identification_design
 
| Thu Feb 04 00:00:00 GMT 2010
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
|-
 
|  Histone_H3K27ac_N2_L3_(WA30634849_H3K27AC_N2_L3)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K27ac_N2_L3_(WA30634849_H3K27AC_N2_L3)
 
| 2773
 
| 2773
| binding_site_identification_design
 
| Thu Feb 04 00:00:00 GMT 2010
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Histone_H3K27me3_N2_L3_(HK00013_H3K27ME31E7_N2_L3)
+
| Histone_H3K27me3_N2_L3_(HK00013_H3K27ME31E7_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2400
 
| 2400
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Thu Oct 08 01:00:00 BST 2009
 
| Thu Oct 08 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K36me1_N2_EEMB_(AB9048_H3K36ME1206009_N2_EEMB)
+
| Histone_H3K36me1_N2_EEMB_(AB9048_H3K36ME1206009_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2604
 
| 2604
| binding_site_identification_design
 
| Wed Jan 13 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Thu Oct 21 01:00:00 BST 2010
 
| Thu Oct 21 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K36me2_N2_EEMB_(AB9049_H3K36ME2608457_N2_EEMB)
+
| Histone_H3K36me2_N2_EEMB_(AB9049_H3K36ME2608457_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2338
 
| 2338
| binding_site_identification_design
 
| Fri Aug 28 01:00:00 BST 2009
 
 
| Wed Sep 30 01:00:00 BST 2009
 
| Wed Sep 30 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K36me2_N2_EEMB_(HK00012_H3K36ME22C3_N2_EEMB)
+
| Histone_H3K36me2_N2_EEMB_(HK00012_H3K36ME22C3_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 909
 
| 909
| binding_site_identification_design
 
| Fri Aug 28 01:00:00 BST 2009
 
 
| Tue Sep 22 01:00:00 BST 2009
 
| Tue Sep 22 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K36me2_N2_L3_(HK00012_H3K36ME22C3_N2_L3)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K36me2_N2_L3_(HK00012_H3K36ME22C3_N2_L3)
 
| 2399
 
| 2399
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Wed Oct 07 01:00:00 BST 2009
 
| Wed Oct 07 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K36me3_N2_EEMB_(HK00001_H3K36ME313C9_N2_EEMB)
+
| Histone_H3K36me3_N2_EEMB_(HK00001_H3K36ME313C9_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 973
 
| 973
| binding_site_identification_design
 
| Thu Aug 27 01:00:00 BST 2009
 
 
| Tue Sep 22 01:00:00 BST 2009
 
| Tue Sep 22 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K36me3_N2_L3_(HK00001_H3K36ME313C9_N2_L3)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K36me3_N2_L3_(HK00001_H3K36ME313C9_N2_L3)
 
| 2401
 
| 2401
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Thu Oct 08 01:00:00 BST 2009
 
| Thu Oct 08 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K36me3_from_N2_L3_larvae_(AB9050_H3K36ME3_N2_L3)
+
| Histone_H3K36me3_from_N2_L3_larvae_(AB9050_H3K36ME3_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 175
 
| 175
| binding_site_identification_design
 
| Wed Apr 16 01:00:00 BST 2008
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Aug 23 01:00:00 BST 2010
 
| Mon Aug 23 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K4me1_N2_EEMB_(AB8895_H3K4ME1733246_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K4me1_N2_EEMB_(AB8895_H3K4ME1733246_N2_EEMB)
 
| 2726
 
| 2726
| binding_site_identification_design
 
| Wed Jan 13 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Fri Oct 29 01:00:00 BST 2010
 
| Fri Oct 29 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K4me1_N2_L3_(AB8895_H3K4ME1733246_N2_L3)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K4me1_N2_L3_(AB8895_H3K4ME1733246_N2_L3)
 
| 2775
 
| 2775
| binding_site_identification_design
 
| Thu Feb 04 00:00:00 GMT 2010
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
|-
 
|  Histone_H3K4me2_N2_EEMB_(MP07030_H3K4ME2DAM1570816_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K4me2_N2_EEMB_(MP07030_H3K4ME2DAM1570816_N2_EEMB)
 
| 2645
 
| 2645
| binding_site_identification_design
 
| Wed Jan 13 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Tue Oct 26 01:00:00 BST 2010
 
| Tue Oct 26 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K4me2_N2_EEMB_(WA30834809_H3K4ME2_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K4me2_N2_EEMB_(WA30834809_H3K4ME2_N2_EEMB)
 
| 2445
 
| 2445
| binding_site_identification_design
 
| Thu Aug 27 01:00:00 BST 2009
 
 
| Wed Oct 14 01:00:00 BST 2009
 
| Wed Oct 14 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K4me2_N2_L3_(WA30834809_H3K4ME2_N2_L3)
+
| Histone_H3K4me2_N2_L3_(WA30834809_H3K4ME2_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2402
 
| 2402
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Thu Oct 08 01:00:00 BST 2009
 
| Thu Oct 08 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K4me3_N2_EEMB_(WA30534819_H3K4ME3_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K4me3_N2_EEMB_(WA30534819_H3K4ME3_N2_EEMB)
 
| 2311
 
| 2311
| binding_site_identification_design
 
| Thu Aug 27 01:00:00 BST 2009
 
 
| Tue Sep 22 01:00:00 BST 2009
 
| Tue Sep 22 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K4me3_from_N2_L3_larvae_(AR0169_H3K4me3_N2_L3)
+
| Histone_H3K4me3_from_N2_L3_larvae_(AR0169_H3K4me3_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 176
 
| 176
| binding_site_identification_design
 
| Wed Apr 16 01:00:00 BST 2008
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Aug 23 01:00:00 BST 2010
 
| Mon Aug 23 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K79me1_N2_EEMB_(AB2886_H3K79ME1361912_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K79me1_N2_EEMB_(AB2886_H3K79ME1361912_N2_EEMB)
 
| 2410
 
| 2410
| binding_site_identification_design
 
| Sun Oct 11 01:00:00 BST 2009
 
 
| Mon Oct 12 01:00:00 BST 2009
 
| Mon Oct 12 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K79me2_N2_EEMB_(AB3594_H3K79ME2346021_N2_EEMB)
+
| Histone_H3K79me2_N2_EEMB_(AB3594_H3K79ME2346021_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2442
 
| 2442
| binding_site_identification_design
 
| Sun Oct 11 01:00:00 BST 2009
 
 
| Tue Oct 13 01:00:00 BST 2009
 
| Tue Oct 13 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K79me3_N2_EEMB_(AB2621_H3K79ME3361576_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K79me3_N2_EEMB_(AB2621_H3K79ME3361576_N2_EEMB)
 
| 2443
 
| 2443
| binding_site_identification_design
 
| Sun Oct 11 01:00:00 BST 2009
 
 
| Tue Oct 13 01:00:00 BST 2009
 
| Tue Oct 13 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K9ac_N2_EEMB_(AB4441_H3K9AC_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K9ac_N2_EEMB_(AB4441_H3K9AC_N2_EEMB)
 
| 2728
 
| 2728
| binding_site_identification_design
 
| Wed Jan 13 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Fri Oct 29 01:00:00 BST 2010
 
| Fri Oct 29 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K9me1_N2_EEMB_(AB8896_H3K9ME1104560_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K9me1_N2_EEMB_(AB8896_H3K9ME1104560_N2_EEMB)
 
| 2739
 
| 2739
| binding_site_identification_design
 
| Fri Jan 29 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Fri Oct 29 01:00:00 BST 2010
 
| Fri Oct 29 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K9me1_N2_EEMB_(AB9045_H3K9ME1291918_N2_EEMB)
+
| Histone_H3K9me1_N2_EEMB_(AB9045_H3K9ME1291918_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2646
 
| 2646
| binding_site_identification_design
 
| Wed Jan 13 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Tue Oct 26 01:00:00 BST 2010
 
| Tue Oct 26 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K9me1_N2_L3_(AB9045_H3K9ME1291918_N2_L3)
+
| Histone_H3K9me1_N2_L3_(AB9045_H3K9ME1291918_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2770
 
| 2770
| binding_site_identification_design
 
| Thu Feb 04 00:00:00 GMT 2010
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Histone_H3K9me2_N2_EEMB_(HK00008_H3K9ME26D11_N2_EEMB)
+
| Histone_H3K9me2_N2_EEMB_(HK00008_H3K9ME26D11_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2444
 
| 2444
| binding_site_identification_design
 
| Fri Aug 28 01:00:00 BST 2009
 
 
| Wed Oct 14 01:00:00 BST 2009
 
| Wed Oct 14 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K9me2_N2_L3_(HK00008_H3K9ME26D11_N2_L3)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K9me2_N2_L3_(HK00008_H3K9ME26D11_N2_L3)
 
| 2406
 
| 2406
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Sun Oct 11 01:00:00 BST 2009
 
| Sun Oct 11 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K9me3_N2_EEMB_1_(UP07442_H3K9ME3_N2_EEMB)
+
| Histone_H3K9me3_N2_EEMB_1_(UP07442_H3K9ME3_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 691
 
| 691
| binding_site_identification_design
 
| Wed Feb 03 00:00:00 GMT 2010
 
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K9me3_N2_EEMB_2_(AB8898_H3K9ME3339901_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K9me3_N2_EEMB_2_(AB8898_H3K9ME3339901_N2_EEMB)
 
| 2339
 
| 2339
| binding_site_identification_design
 
| Fri Aug 28 01:00:00 BST 2009
 
 
| Wed Sep 30 01:00:00 BST 2009
 
| Wed Sep 30 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K9me3_N2_EEMB_2_(HK00009_H3K9ME32F3_N2_EEMB)
+
| Histone_H3K9me3_N2_EEMB_2_(HK00009_H3K9ME32F3_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 982
 
| 982
| binding_site_identification_design
 
| Fri Aug 28 01:00:00 BST 2009
 
 
| Tue Sep 22 01:00:00 BST 2009
 
| Tue Sep 22 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3K9me3_N2_L3_(HK00009_H3K9ME32F3_N2_L3)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3K9me3_N2_L3_(HK00009_H3K9ME32F3_N2_L3)
 
| 2398
 
| 2398
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Wed Oct 07 01:00:00 BST 2009
 
| Wed Oct 07 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3K9me3_from_N2_L3_larvae_(UP07442_H3K9ME3_N2_L3)
+
| Histone_H3K9me3_from_N2_L3_larvae_(UP07442_H3K9ME3_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 188
 
| 188
| binding_site_identification_design
 
| Wed Apr 09 01:00:00 BST 2008
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Aug 23 01:00:00 BST 2010
 
| Mon Aug 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3_N2_EEMB_1_(AR0144_H3144_N2_EEMB)
+
| Histone_H3_N2_EEMB_1_(AR0144_H3144_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2312
 
| 2312
| binding_site_identification_design
 
| Thu May 14 01:00:00 BST 2009
 
 
| Wed Sep 23 01:00:00 BST 2009
 
| Wed Sep 23 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3_N2_EEMB_2_(AB1791_H3609253_N2_EEMB)
+
| Histone_H3_N2_EEMB_2_(AB1791_H3609253_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2313
 
| 2313
| binding_site_identification_design
 
| Fri Aug 21 01:00:00 BST 2009
 
 
| Wed Sep 23 01:00:00 BST 2009
 
| Wed Sep 23 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3_N2_L3_(AB1791_H3_N2_L3_new)
+
| Histone_H3_N2_L3_(AB1791_H3_N2_L3_new)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2409
 
| 2409
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Mon Oct 12 01:00:00 BST 2009
 
| Mon Oct 12 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Histone_H3_N2_L3_1_(AR0144_H3144_N2_L3_LM)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H3_N2_L3_1_(AR0144_H3144_N2_L3_LM)
 
| 2408
 
| 2408
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Sun Oct 11 01:00:00 BST 2009
 
| Sun Oct 11 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H3_N2_L3_2_(AR0144_H3144_N2_L3)
+
| Histone_H3_N2_L3_2_(AR0144_H3144_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2407
 
| 2407
| binding_site_identification_design
 
| Wed Oct 07 01:00:00 BST 2009
 
 
| Sun Oct 11 01:00:00 BST 2009
 
| Sun Oct 11 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Histone_H4K20me1_N2_L3_(AB9051_H4K20ME1104513_N2_L3)
+
| Histone_H4K20me1_N2_L3_(AB9051_H4K20ME1104513_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2784
 
| 2784
| binding_site_identification_design
 
| Thu Feb 04 00:00:00 GMT 2010
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Histone_H4K8ac_N2_L3_(AB15823_H4K8AC487128_N2_L3)
+
| Histone_H4K8ac_N2_L3_(AB15823_H4K8AC487128_N2_L3)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2774
 
| 2774
| binding_site_identification_design
 
| Thu Feb 04 00:00:00 GMT 2010
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
|-
 
|  Histone_H4_N2_L3_(MP05858_H4DAM1636076_N2_L3)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H4_N2_L3_(MP05858_H4DAM1636076_N2_L3)
 
| 2768
 
| 2768
| binding_site_identification_design
 
| Thu Feb 04 00:00:00 GMT 2010
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
|-
 
|  Histone_H4_Tetra_ac_N2_EEMB_(LPAR109_H4TETRAAC109_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Histone_H4_Tetra_ac_N2_EEMB_(LPAR109_H4TETRAAC109_N2_EEMB)
 
| 2766
 
| 2766
| binding_site_identification_design
 
| Wed Jan 13 00:00:00 GMT 2010
 
 
| Mon Feb 01 00:00:00 GMT 2010
 
| Mon Feb 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
|-
 
|  Intron Confirmation Chromosome I 2010-01-28
 
| This experiment identifies intron boundary coordinates in C. elegans
 
|-
 
|  genomic sequence. Initially, we run genefinder to predict protein-coding
 
|-
 
|  transcripts from the C. elegans chromosome sequences. We align
 
|-
 
|  existing cDNA and EST sequences to the predicted transcript sequences
 
|-
 
|  to confirm the transcript structure. Predicted splice junctions
 
|-
 
|  unconfirmed by these alignments are tested for confirmation using
 
|-
 
|  RT-PCR, DNA sequencing, and sequence alignment. These PCR experiments
 
 
|-
 
|-
| use gene-specific/gene-specific, 5' RACE/gene-specific, and
+
| Intron Confirmation Chromosome I 2010-01-28
|-
 
|  gene-specific/3' RACE primer pairs.
 
 
| 2718
 
| 2718
| transcript_identification_design
 
| Mon Feb 08 00:00:00 GMT 2010
 
 
| Mon Feb 08 00:00:00 GMT 2010
 
| Mon Feb 08 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
|
 
|-
 
|  Intron Confirmation Chromosome II 2009-09-21
 
| This experiment identifies intron boundary coordinates in C. elegans
 
|-
 
|  genomic sequence. Initially, we run genefinder to predict protein-coding
 
|-
 
|  transcripts from the C. elegans chromosome sequences. We align
 
|-
 
|  existing cDNA and EST sequences to the predicted transcript sequences
 
|-
 
|  to confirm the transcript structure. Predicted splice junctions
 
|-
 
|  unconfirmed by these alignments are tested for confirmation using
 
|-
 
|  RT-PCR, DNA sequencing, and sequence alignment. These PCR experiments
 
 
|-
 
|-
| use gene-specific/gene-specific, 5' RACE/gene-specific, and
+
| Intron Confirmation Chromosome II 2009-09-21
|-
 
|  gene-specific/3' RACE primer pairs.
 
 
| 2304
 
| 2304
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| L1 20dC 0hrs post-L1 N2 tiling array
+
| L1 20dC 0hrs post-L1 N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 484
 
| 484
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L1 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| L1 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2860
 
| 2860
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
|
 
 
|-
 
|-
| L1 lin-35(n745) integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, and wormbase splice junctions
+
| L1 lin-35(n745) integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, and wormbase splice junctions
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2858
 
| 2858
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
|
 
 
|-
 
|-
| L2 25dC 14hrs post-L1 N2 tiling array
+
| L2 25dC 14hrs post-L1 N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 472
 
| 472
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 A-class neuron tiling array
+
| L2 A-class neuron tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 469
 
| 469
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 GABA neurons tiling array
+
| L2 GABA neurons tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 466
 
| 466
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| L2 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2861
 
| 2861
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
|
 
 
|-
 
|-
| L2 body wall muscle tiling array
+
| L2 body wall muscle tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 465
 
| 465
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 coelomocytes tiling array
+
| L2 coelomocytes tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 657
 
| 657
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Fri Jun 25 01:00:00 BST 2010
 
| Fri Jun 25 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 excretory cell tiling array
+
| L2 excretory cell tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 464
 
| 464
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 glutamate receptor expressing neurons tiling array
+
| L2 glutamate receptor expressing neurons tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 658
 
| 658
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Fri Jun 25 01:00:00 BST 2010
 
| Fri Jun 25 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 intestine tiling array
+
| L2 intestine tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 463
 
| 463
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 panneural tiling array
+
| L2 panneural tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 462
 
| 462
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 polyA enriched 20dC 14hrs post-L1 N2 tiling array
+
| L2 polyA enriched 20dC 14hrs post-L1 N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 477
 
| 477
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L2 reference (mockIP) tiling array
+
| L2 reference (mockIP) tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 461
 
| 461
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L3 25dC 25hrs post-L1 N2 tiling array
+
| L3 25dC 25hrs post-L1 N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 474
 
| 474
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L3 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| L3 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2862
 
| 2862
| transcript_identification_design
 
| Wed Feb 17 00:00:00 GMT 2010
 
 
| Wed Feb 17 00:00:00 GMT 2010
 
| Wed Feb 17 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
|
 
 
|-
 
|-
| L3-L4 PVD & OLL neurons tiling array
+
| L3-L4 PVD & OLL neurons tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 460
 
| 460
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L3-L4 dopaminergic neuron tiling array
+
| L3-L4 dopaminergic neuron tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 655
 
| 655
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Fri Jun 25 01:00:00 BST 2010
 
| Fri Jun 25 01:00:00 BST 2010
|
 
 
|-
 
|-
| L3-L4 hypodermal cells tiling array
+
| L3-L4 hypodermal cells tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 2454
 
| 2454
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| L3-L4 reference (mockIP) tiling array
+
| L3-L4 reference (mockIP) tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 659
 
| 659
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Fri Jun 25 01:00:00 BST 2010
 
| Fri Jun 25 01:00:00 BST 2010
|
 
 
|-
 
|-
| L4 25dC 36hrs post-L1 N2 tiling array
+
| L4 25dC 36hrs post-L1 N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 473
 
| 473
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| L4 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| L4 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2863
 
| 2863
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
|
 
 
|-
 
|-
| L4 male integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| L4 male integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2859
 
| 2859
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
 
| Wed Nov 17 00:00:00 GMT 2010
|
 
|-
 
|  LEM-2_N2_MXEMB_(SDQ3891_LEM2_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| LEM-2_N2_MXEMB_(SDQ3891_LEM2_N2_MXEMB)
 
| 2729
 
| 2729
| binding_site_identification_design
 
| Thu Jan 28 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Fri Oct 29 01:00:00 BST 2010
 
| Fri Oct 29 01:00:00 BST 2010
|
 
 
|-
 
|-
| MES-4_FLAG_Early_Embryos_(SGF3165_FLAG_MES4FLAG_EEMB)
+
| MES-4_FLAG_Early_Embryos_(SGF3165_FLAG_MES4FLAG_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 195
 
| 195
| binding_site_identification_design
 
| Wed Jul 09 01:00:00 BST 2008
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 23 01:00:00 BST 2010
 
| Mon Aug 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| MES-4_N2_EEMB_(SDQ0791_MES4_N2_EEMB)
+
| MES-4_N2_EEMB_(SDQ0791_MES4_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 911
 
| 911
| binding_site_identification_design
 
| Thu Mar 05 00:00:00 GMT 2009
 
 
| Tue Sep 22 01:00:00 BST 2009
 
| Tue Sep 22 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| MIX-1_N2_Mixed_Embryos_(JL00004_MIX1_N2_MXEMB)
+
| MIX-1_N2_Mixed_Embryos_(JL00004_MIX1_N2_MXEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 336
 
| 336
| binding_site_identification_design
 
| Mon Aug 25 01:00:00 BST 2008
 
 
| Mon Nov 30 00:00:00 GMT 2009
 
| Mon Nov 30 00:00:00 GMT 2009
 
| Mon Aug 23 01:00:00 BST 2010
 
| Mon Aug 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| MRG-1_N2_EEMB_(SDQ0790_MRG1_N2_EEMB)
+
| MRG-1_N2_EEMB_(SDQ0790_MRG1_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 897
 
| 897
| binding_site_identification_design
 
| Thu Mar 05 00:00:00 GMT 2009
 
 
| Tue Sep 22 01:00:00 BST 2009
 
| Tue Sep 22 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Mononucleosomes_JK1107_AD
+
| Mononucleosomes_JK1107_AD
| We digested chromatin with Micrococcal Nuclease and isolated mononucleosome length fragment. These fragments were sequenced by Illumina Genome Analyzer II. Data was processed to obtain nucleosome density over entire genome.
 
 
| 2764
 
| 2764
| binding_site_identification_design
 
| Mon Feb 01 00:00:00 GMT 2010
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Mononucleosomes_N2_MXEMB
+
| Mononucleosomes_N2_MXEMB
| We digested chromatin with Micrococcal Nuclease and isolated mononucleosome length fragment. These fragments were sequenced by Illumina Genome Analyzer II. Data was processed to obtain nucleosome density over entire genome.
 
 
| 2763
 
| 2763
| binding_site_identification_design
 
| Mon Feb 01 00:00:00 GMT 2010
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| NA_MES4FLAG_EEMB
+
| NA_MES4FLAG_EEMB
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 202
 
| 202
| binding_site_identification_design
 
| Wed Jun 04 01:00:00 BST 2008
 
 
| Thu Jan 15 00:00:00 GMT 2009
 
| Thu Jan 15 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  NPP-13_N2_MXEMB_(SDQ3897_NPP13_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| NPP-13_N2_MXEMB_(SDQ3897_NPP13_N2_MXEMB)
 
| 2738
 
| 2738
| binding_site_identification_design
 
| Thu Jan 28 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Fri Oct 29 01:00:00 BST 2010
 
| Fri Oct 29 01:00:00 BST 2010
|
 
|-
 
|  Negative_control_Antibody_N2_EEMB_(SS00050_IGG_N2_EEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Negative_control_Antibody_N2_EEMB_(SS00050_IGG_N2_EEMB)
 
| 2382
 
| 2382
| binding_site_identification_design
 
| Fri May 09 01:00:00 BST 2014
 
 
| Tue Feb 10 00:00:00 GMT 2009
 
| Tue Feb 10 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Negative_control_No_Antibody_N2_EEMB_(NA_N2_EEMB)
+
| Negative_control_No_Antibody_N2_EEMB_(NA_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 2364
 
| 2364
| binding_site_identification_design
 
| Fri Aug 28 01:00:00 BST 2009
 
 
| Wed Sep 30 01:00:00 BST 2009
 
| Wed Sep 30 01:00:00 BST 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  Negative_control_antibody_from_N2_L3_larvae_(JA00002_IGG_N2_L3)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| Negative_control_antibody_from_N2_L3_larvae_(JA00002_IGG_N2_L3)
 
| 179
 
| 179
| binding_site_identification_design
 
| Fri May 09 01:00:00 BST 2008
 
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Feb 15 00:00:00 GMT 2010
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  POL-2_CTD_Mixed_Embryos (ABAB5408_4H8_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| POL-2_CTD_Mixed_Embryos (ABAB5408_4H8_N2_MXEMB)
 
| 174
 
| 174
| binding_site_identification_design
 
| Sun Mar 16 00:00:00 GMT 2008
 
 
| Mon Jun 02 01:00:00 BST 2008
 
| Mon Jun 02 01:00:00 BST 2008
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| POL-2_N2_L4_(CVMMS126R_8WG16_N2_L4)
+
| POL-2_N2_L4_(CVMMS126R_8WG16_N2_L4)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 599
 
| 599
| binding_site_identification_design
 
| Thu Nov 26 00:00:00 GMT 2009
 
 
| Mon Feb 23 00:00:00 GMT 2009
 
| Mon Feb 23 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  POL-2_N2_Mixed_Embryos (CVMMS126R_8WG16_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| POL-2_N2_Mixed_Embryos (CVMMS126R_8WG16_N2_MXEMB)
 
| 44
 
| 44
| binding_site_identification_design
 
| Thu Jan 17 00:00:00 GMT 2008
 
 
| Mon Jul 28 01:00:00 BST 2008
 
| Mon Jul 28 01:00:00 BST 2008
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Pol_II_CTD_N2_EEMB_(ABAB817_8WG16_N2_EEMB)
+
| Pol_II_CTD_N2_EEMB_(ABAB817_8WG16_N2_EEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 663
 
| 663
| binding_site_identification_design
 
| Wed Feb 03 00:00:00 GMT 2010
 
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Wed Feb 03 00:00:00 GMT 2010
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNA-Seq - pathogen Harposporium 25dC 24hr exposure post-adulthood N2 genelets
+
| RNA-Seq - pathogen Harposporium 25dC 24hr exposure post-adulthood N2 genelets
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2587
 
| 2587
| transcript_identification_design
 
| Mon Feb 01 00:00:00 GMT 2010
 
 
| Mon Feb 01 00:00:00 GMT 2010
 
| Mon Feb 01 00:00:00 GMT 2010
 
| Thu Oct 21 01:00:00 BST 2010
 
| Thu Oct 21 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNA-Seq - pathogen Harposporium 25dC 24hr exposure post-adulthood N2 sequences & alignments
+
| RNA-Seq - pathogen Harposporium 25dC 24hr exposure post-adulthood N2 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2580
 
| 2580
| transcript_identification_design
 
| Sun Jan 31 00:00:00 GMT 2010
 
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Sun Jan 31 00:00:00 GMT 2010
 
| Tue Oct 19 01:00:00 BST 2010
 
| Tue Oct 19 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNA-Seq - pathogen Harposporium control OP50 25dC 24hr exposure post-adulthood N2 genelets
+
| RNA-Seq - pathogen Harposporium control OP50 25dC 24hr exposure post-adulthood N2 genelets
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2588
 
| 2588
| transcript_identification_design
 
| Tue Feb 02 00:00:00 GMT 2010
 
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNA-Seq - pathogen Harposporium control OP50 25dC 24hr exposure post-adulthood N2 sequences & alignments
+
| RNA-Seq - pathogen Harposporium control OP50 25dC 24hr exposure post-adulthood N2 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2581
 
| 2581
| transcript_identification_design
 
| Tue Feb 02 00:00:00 GMT 2010
 
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Tue Oct 19 01:00:00 BST 2010
 
| Tue Oct 19 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNA-Seq - pathogen Smacescens control OP50 25dC 24hr exposure post-adulthood N2 genelets
+
| RNA-Seq - pathogen Smacescens control OP50 25dC 24hr exposure post-adulthood N2 genelets
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2591
 
| 2591
| transcript_identification_design
 
| Tue Feb 02 00:00:00 GMT 2010
 
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNA-Seq - pathogen Smacescens control OP50 25dC 24hr exposure post-adulthood N2 sequences & alignments
+
| RNA-Seq - pathogen Smacescens control OP50 25dC 24hr exposure post-adulthood N2 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2584
 
| 2584
| transcript_identification_design
 
| Tue Feb 02 00:00:00 GMT 2010
 
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Wed Oct 20 01:00:00 BST 2010
 
| Wed Oct 20 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNA-seq - pathogen Smacescens 25dC 24hr exposure post-adulthood N2 genelets
+
| RNA-seq - pathogen Smacescens 25dC 24hr exposure post-adulthood N2 genelets
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2589
 
| 2589
| transcript_identification_design
 
| Tue Feb 02 00:00:00 GMT 2010
 
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNA-seq - pathogen Smacescens 25dC 24hr exposure post-adulthood N2 sequences & alignment
+
| RNA-seq - pathogen Smacescens 25dC 24hr exposure post-adulthood N2 sequences & alignment
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2582
 
| 2582
| transcript_identification_design
 
| Tue Feb 02 00:00:00 GMT 2010
 
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Wed Oct 20 01:00:00 BST 2010
 
| Wed Oct 20 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNA-seq - soma-only mid-L4 25dC 36hrs post-L1 JK1107 genelets
+
| RNA-seq - soma-only mid-L4 25dC 36hrs post-L1 JK1107 genelets
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2590
 
| 2590
| transcript_identification_design
 
| Tue Feb 02 00:00:00 GMT 2010
 
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Tue Feb 02 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
 
| Mon Nov 01 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNA-seq - soma-only mid-L4 25dC 36hrs post-L1 JK1107 sequences & alignments
+
| RNA-seq - soma-only mid-L4 25dC 36hrs post-L1 JK1107 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2583
 
| 2583
| transcript_identification_design
 
| Wed Jan 20 00:00:00 GMT 2010
 
 
| Wed Jan 20 00:00:00 GMT 2010
 
| Wed Jan 20 00:00:00 GMT 2010
 
| Wed Oct 20 01:00:00 BST 2010
 
| Wed Oct 20 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - 0911 aggregate fourteen stages - non-redundant exons
+
| RNAseq - 0911 aggregate fourteen stages - non-redundant exons
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2647
 
| 2647
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Nov 18 00:00:00 GMT 2010
 
| Thu Nov 18 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - Adult spe-9 23dC 8days post-L4 molt genelets revised
+
| RNAseq - Adult spe-9 23dC 8days post-L4 molt genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2835
 
| 2835
| transcript_identification_design
 
| Thu Feb 04 00:00:00 GMT 2010
 
 
| Thu Feb 04 00:00:00 GMT 2010
 
| Thu Feb 04 00:00:00 GMT 2010
 
| Wed Nov 03 00:00:00 GMT 2010
 
| Wed Nov 03 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - Adult spe-9 23dC 8days post-L4 molt sequences & alignment
+
| RNAseq - Adult spe-9 23dC 8days post-L4 molt sequences & alignment
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2345
 
| 2345
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Thu Aug 12 01:00:00 BST 2010
 
| Thu Aug 12 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - Young Adult 25dC 46hrs post-L1 genelets revised
+
| RNAseq - Young Adult 25dC 46hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2836
 
| 2836
| transcript_identification_design
 
| Thu Feb 04 00:00:00 GMT 2010
 
 
| Thu Feb 04 00:00:00 GMT 2010
 
| Thu Feb 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - Young Adult 25dC 46hrs post-L1 sequences & alignment
+
| RNAseq - Young Adult 25dC 46hrs post-L1 sequences & alignment
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2354
 
| 2354
| transcript_identification_design
 
| Sun Nov 15 00:00:00 GMT 2009
 
 
| Sun Nov 15 00:00:00 GMT 2009
 
| Sun Nov 15 00:00:00 GMT 2009
 
| Sat Aug 14 01:00:00 BST 2010
 
| Sat Aug 14 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - dauer daf-2 25dC 91hrs post-L1 genelets revised
+
| RNAseq - dauer daf-2 25dC 91hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2837
 
| 2837
| transcript_identification_design
 
| Fri Feb 05 00:00:00 GMT 2010
 
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - dauer daf-2 25dC 91hrs post-L1 sequences & alignments
+
| RNAseq - dauer daf-2 25dC 91hrs post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2347
 
| 2347
| transcript_identification_design
 
| Sat Nov 14 00:00:00 GMT 2009
 
 
| Sat Nov 14 00:00:00 GMT 2009
 
| Sat Nov 14 00:00:00 GMT 2009
 
| Fri Aug 13 01:00:00 BST 2010
 
| Fri Aug 13 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - dauer entry daf-2 25dC 48hrs post-L1 genelets revised
+
| RNAseq - dauer entry daf-2 25dC 48hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2838
 
| 2838
| transcript_identification_design
 
| Fri Feb 05 00:00:00 GMT 2010
 
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - dauer entry daf-2 25dC 48hrs post-L1 sequences & alignments
+
| RNAseq - dauer entry daf-2 25dC 48hrs post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2387
 
| 2387
| transcript_identification_design
 
| Sun Nov 15 00:00:00 GMT 2009
 
 
| Sun Nov 15 00:00:00 GMT 2009
 
| Sun Nov 15 00:00:00 GMT 2009
 
| Sat Aug 14 01:00:00 BST 2010
 
| Sat Aug 14 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - dauer exit daf-2 25dC 91hrs 15dC 12hrs post-L1 genelets revised
+
| RNAseq - dauer exit daf-2 25dC 91hrs 15dC 12hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2839
 
| 2839
| transcript_identification_design
 
| Fri Feb 05 00:00:00 GMT 2010
 
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - dauer exit daf-2 25dC 91hrs 15dC 12hrs post-L1 sequences & alignments
+
| RNAseq - dauer exit daf-2 25dC 91hrs 15dC 12hrs post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2349
 
| 2349
| transcript_identification_design
 
| Sat Nov 14 00:00:00 GMT 2009
 
 
| Sat Nov 14 00:00:00 GMT 2009
 
| Sat Nov 14 00:00:00 GMT 2009
 
| Fri Aug 13 01:00:00 BST 2010
 
| Fri Aug 13 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - early embryo genelets revised
+
| RNAseq - early embryo genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2840
 
| 2840
| transcript_identification_design
 
| Fri Feb 05 00:00:00 GMT 2010
 
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - early embryo sequences & alignments
+
| RNAseq - early embryo sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2321
 
| 2321
| transcript_identification_design
 
| Thu Nov 12 00:00:00 GMT 2009
 
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Thu Nov 12 00:00:00 GMT 2009
 
| Wed Aug 11 01:00:00 BST 2010
 
| Wed Aug 11 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - embryo him-8 20dC post-L1 genelets revised
+
| RNAseq - embryo him-8 20dC post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2841
 
| 2841
| transcript_identification_design
 
| Fri Feb 05 00:00:00 GMT 2010
 
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - embryo him-8 20dC post-L1 sequences & alignments
+
| RNAseq - embryo him-8 20dC post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2346
 
| 2346
| transcript_identification_design
 
| Sat Nov 14 00:00:00 GMT 2009
 
 
| Sat Nov 14 00:00:00 GMT 2009
 
| Sat Nov 14 00:00:00 GMT 2009
 
| Fri Aug 13 01:00:00 BST 2010
 
| Fri Aug 13 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - late embryo 20dC 4.5hrs post-early embryo genelets revised
+
| RNAseq - late embryo 20dC 4.5hrs post-early embryo genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2842
 
| 2842
| transcript_identification_design
 
| Wed Feb 10 00:00:00 GMT 2010
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Tue Nov 09 00:00:00 GMT 2010
 
| Tue Nov 09 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - late embryo 20dC 4.5hrs post-early embryo sequences & alignments
+
| RNAseq - late embryo 20dC 4.5hrs post-early embryo sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2324
 
| 2324
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Thu Aug 12 01:00:00 BST 2010
 
| Thu Aug 12 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - lin-35(n745) mid-L1 25dC 4.0hrs post-L1 genelets revised
+
| RNAseq - lin-35(n745) mid-L1 25dC 4.0hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2843
 
| 2843
| transcript_identification_design
 
| Fri Feb 05 00:00:00 GMT 2010
 
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - lin-35(n745) mid-L1 25dC 4.0hrs post-L1 sequences & alignments
+
| RNAseq - lin-35(n745) mid-L1 25dC 4.0hrs post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2343
 
| 2343
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Thu Aug 12 01:00:00 BST 2010
 
| Thu Aug 12 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - male mid-L4 dpy28(y1);him-8(e1489) 25dC 30hrs post-L1 genelets revised
+
| RNAseq - male mid-L4 dpy28(y1);him-8(e1489) 25dC 30hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2844
 
| 2844
| transcript_identification_design
 
| Fri Feb 05 00:00:00 GMT 2010
 
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - male mid-L4 dpy28(y1);him-8(e1489) 25dC 30hrs post-L1 sequences & alignments
+
| RNAseq - male mid-L4 dpy28(y1);him-8(e1489) 25dC 30hrs post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2325
 
| 2325
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Thu Aug 12 01:00:00 BST 2010
 
| Thu Aug 12 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - mid-L1 20dC 4hrs post-L1 genelets revised
+
| RNAseq - mid-L1 20dC 4hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2845
 
| 2845
| transcript_identification_design
 
| Thu Feb 11 00:00:00 GMT 2010
 
 
| Thu Feb 11 00:00:00 GMT 2010
 
| Thu Feb 11 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - mid-L1 20dC 4hrs post-L1 sequences & alignments
+
| RNAseq - mid-L1 20dC 4hrs post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2326
 
| 2326
| transcript_identification_design
 
| Fri Nov 13 00:00:00 GMT 2009
 
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Fri Nov 13 00:00:00 GMT 2009
 
| Thu Aug 12 01:00:00 BST 2010
 
| Thu Aug 12 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - mid-L2 25dC 14 hrs post-L1 sequences & alignments
+
| RNAseq - mid-L2 25dC 14 hrs post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2351
 
| 2351
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Fri Aug 13 01:00:00 BST 2010
 
| Fri Aug 13 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - mid-L2 25dC 14hrs post-L1 genelets revised
+
| RNAseq - mid-L2 25dC 14hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2846
 
| 2846
| transcript_identification_design
 
| Thu Feb 11 00:00:00 GMT 2010
 
 
| Thu Feb 11 00:00:00 GMT 2010
 
| Thu Feb 11 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - mid-L3 25dC 25hrs post-L1 genelets revised
+
| RNAseq - mid-L3 25dC 25hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2847
 
| 2847
| transcript_identification_design
 
| Fri Feb 05 00:00:00 GMT 2010
 
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Fri Feb 05 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
 
| Thu Nov 04 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - mid-L3 25dC 25hrs post-L1 sequences & alignments
+
| RNAseq - mid-L3 25dC 25hrs post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2352
 
| 2352
| transcript_identification_design
 
| Fri Nov 20 00:00:00 GMT 2009
 
 
| Fri Nov 20 00:00:00 GMT 2009
 
| Fri Nov 20 00:00:00 GMT 2009
 
| Fri Aug 13 01:00:00 BST 2010
 
| Fri Aug 13 01:00:00 BST 2010
|
 
 
|-
 
|-
| RNAseq - mid-L4 25dC 36hrs post-L1 genelets revised
+
| RNAseq - mid-L4 25dC 36hrs post-L1 genelets revised
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2848
 
| 2848
| transcript_identification_design
 
| Fri Feb 12 00:00:00 GMT 2010
 
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Tue Nov 09 00:00:00 GMT 2010
 
| Tue Nov 09 00:00:00 GMT 2010
|
 
 
|-
 
|-
| RNAseq - mid-L4 25dC 36hrs post-L1 sequences & alignments
+
| RNAseq - mid-L4 25dC 36hrs post-L1 sequences & alignments
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2353
 
| 2353
| transcript_identification_design
 
| Fri Nov 20 00:00:00 GMT 2009
 
 
| Fri Nov 20 00:00:00 GMT 2009
 
| Fri Nov 20 00:00:00 GMT 2009
 
| Sat Aug 14 01:00:00 BST 2010
 
| Sat Aug 14 01:00:00 BST 2010
|
 
 
|-
 
|-
| SDC-2_N2_MXEMB_(SDQ3146_SDC2_N2_MXEMB)
+
| SDC-2_N2_MXEMB_(SDQ3146_SDC2_N2_MXEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 645
 
| 645
| binding_site_identification_design
 
| Mon Nov 30 00:00:00 GMT 2009
 
 
| Mon Nov 30 00:00:00 GMT 2009
 
| Mon Nov 30 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  SDC-2_N2_Mixed_Embryos (JL00005_SDC2_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| SDC-2_N2_Mixed_Embryos (JL00005_SDC2_N2_MXEMB)
 
| 338
 
| 338
| binding_site_identification_design
 
| Mon Nov 30 00:00:00 GMT 2009
 
 
| Mon Feb 23 00:00:00 GMT 2009
 
| Mon Feb 23 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  SDC-3_N2_MXEMB_1A_(JL00002_SDC3_N2_MXEMB_1_A)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| SDC-3_N2_MXEMB_1A_(JL00002_SDC3_N2_MXEMB_1_A)
 
| 553
 
| 553
| binding_site_identification_design
 
| Thu Nov 26 00:00:00 GMT 2009
 
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| SDC-3_N2_MXEMB_1B_(JL00002_SDC3_N2_MXEMB_1_B)
+
| SDC-3_N2_MXEMB_1B_(JL00002_SDC3_N2_MXEMB_1_B)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 575
 
| 575
| binding_site_identification_design
 
| Thu Nov 26 00:00:00 GMT 2009
 
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
|-
 
|  SDC-3_N2_Mixed_Embryos_(JL00002_SDC3_N2_MXEMB)
 
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
 
|-
 
|-
| We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
+
| SDC-3_N2_Mixed_Embryos_(JL00002_SDC3_N2_MXEMB)
 
| 127
 
| 127
| binding_site_identification_design
 
| Fri Dec 01 00:00:00 GMT 2006
 
 
| Sun Feb 11 00:00:00 GMT 2007
 
| Sun Feb 11 00:00:00 GMT 2007
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| SDC3_YPT47(V;X)_MXEMB(JL00002_SDC3_YPT47_MXEMB)
+
| SDC3_YPT47(V;X)_MXEMB(JL00002_SDC3_YPT47_MXEMB)
| The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents.
 
|-
 
|  We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.
 
 
| 701
 
| 701
| binding_site_identification_design
 
| Thu Nov 26 00:00:00 GMT 2009
 
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_ALR-1_GFP_L2
+
| Snyder_ALR-1_GFP_L2
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2434
 
| 2434
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_AMA1_GFP_L4YA
+
| Snyder_AMA1_GFP_L4YA
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 589
 
| 589
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_AMA1_POLII_L4YA
+
| Snyder_AMA1_POLII_L4YA
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 590
 
| 590
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_BLMP-1_GFP_L1
+
| Snyder_BLMP-1_GFP_L1
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2612
 
| 2612
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Tue Oct 26 01:00:00 BST 2010
 
| Tue Oct 26 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_CEH-14_GFP_L2
+
| Snyder_CEH-14_GFP_L2
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 734
 
| 734
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_CEH-30_GFP_lemb
+
| Snyder_CEH-30_GFP_lemb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2620
 
| 2620
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Sat Oct 30 01:00:00 BST 2010
 
| Sat Oct 30 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_DAF16_GFP_L4YA
+
| Snyder_DAF16_GFP_L4YA
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 591
 
| 591
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_DAF16_POLII_L4YA
+
| Snyder_DAF16_POLII_L4YA
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 592
 
| 592
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_DPY27_GFP_emb
+
| Snyder_DPY27_GFP_emb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2416
 
| 2416
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 20 00:00:00 GMT 2009
 
| Fri Nov 20 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_EGL-27_GFP_L1
+
| Snyder_EGL-27_GFP_L1
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2621
 
| 2621
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Sat Oct 30 01:00:00 BST 2010
 
| Sat Oct 30 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_EGL5_GFP_L3
+
| Snyder_EGL5_GFP_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2453
 
| 2453
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_EGL5_POLII_L3
+
| Snyder_EGL5_POLII_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2616
 
| 2616
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Thu Feb 11 00:00:00 GMT 2010
 
| Thu Feb 11 00:00:00 GMT 2010
 
| Tue Oct 26 01:00:00 BST 2010
 
| Tue Oct 26 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_ELT-3_GFP_L1
+
| Snyder_ELT-3_GFP_L1
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2614
 
| 2614
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Tue Oct 26 01:00:00 BST 2010
 
| Tue Oct 26 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_EOR-1_GFP_L3
+
| Snyder_EOR-1_GFP_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2417
 
| 2417
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_EOR-1_POLII_L3
+
| Snyder_EOR-1_POLII_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2596
 
| 2596
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 17 00:00:00 GMT 2010
 
| Wed Feb 17 00:00:00 GMT 2010
 
| Fri Oct 22 01:00:00 BST 2010
 
| Fri Oct 22 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_GEI11_GFP_L4
+
| Snyder_GEI11_GFP_L4
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2451
 
| 2451
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_HLH-1_GFP_emb
+
| Snyder_HLH-1_GFP_emb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2431
 
| 2431
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_HLH-8_GFP_L3
+
| Snyder_HLH-8_GFP_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2418
 
| 2418
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_HLH-8_POLII_L3
+
| Snyder_HLH-8_POLII_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2597
 
| 2597
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Thu Feb 11 00:00:00 GMT 2010
 
| Thu Feb 11 00:00:00 GMT 2010
 
| Fri Oct 22 01:00:00 BST 2010
 
| Fri Oct 22 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_LIN-11_GFP_L2
+
| Snyder_LIN-11_GFP_L2
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2429
 
| 2429
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_LIN-13_GFP_emb
+
| Snyder_LIN-13_GFP_emb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2613
 
| 2613
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Tue Oct 26 01:00:00 BST 2010
 
| Tue Oct 26 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_LIN-15B_GFP_L3
+
| Snyder_LIN-15B_GFP_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2610
 
| 2610
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Sat Oct 30 01:00:00 BST 2010
 
| Sat Oct 30 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_LIN-39_GFP_L3
+
| Snyder_LIN-39_GFP_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2432
 
| 2432
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_MAB5_GFP_L3
+
| Snyder_MAB5_GFP_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 593
 
| 593
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_MAB5_POLII_L3
+
| Snyder_MAB5_POLII_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 594
 
| 594
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_MDL-1_GFP_L1
+
| Snyder_MDL-1_GFP_L1
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2601
 
| 2601
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Fri Oct 22 01:00:00 BST 2010
 
| Fri Oct 22 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_MEP-1_GFP_emb
+
| Snyder_MEP-1_GFP_emb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2600
 
| 2600
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Tue Oct 26 01:00:00 BST 2010
 
| Tue Oct 26 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_N2_POLII_L1
+
| Snyder_N2_POLII_L1
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2437
 
| 2437
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_N2_POLII_L2
+
| Snyder_N2_POLII_L2
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2438
 
| 2438
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_N2_POLII_L3
+
| Snyder_N2_POLII_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2439
 
| 2439
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_N2_POLII_L4
+
| Snyder_N2_POLII_L4
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2440
 
| 2440
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_N2_POLII_YA
+
| Snyder_N2_POLII_YA
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2441
 
| 2441
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_N2_POLII_eemb
+
| Snyder_N2_POLII_eemb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2435
 
| 2435
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_N2_POLII_lemb
+
| Snyder_N2_POLII_lemb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2436
 
| 2436
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_NHR-105_GFP_L3
+
| Snyder_NHR-105_GFP_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2617
 
| 2617
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Sat Oct 30 01:00:00 BST 2010
 
| Sat Oct 30 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_NHR-6_GFP_L2
+
| Snyder_NHR-6_GFP_L2
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2433
 
| 2433
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PES1_GFP_L4
+
| Snyder_PES1_GFP_L4
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2450
 
| 2450
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Sat Nov 28 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PHA4_GFP_FedL1
+
| Snyder_PHA4_GFP_FedL1
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 585
 
| 585
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PHA4_GFP_L2
+
| Snyder_PHA4_GFP_L2
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2452
 
| 2452
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Thu Nov 26 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PHA4_GFP_YA
+
| Snyder_PHA4_GFP_YA
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2599
 
| 2599
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Fri Oct 22 01:00:00 BST 2010
 
| Fri Oct 22 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PHA4_GFP_emb
+
| Snyder_PHA4_GFP_emb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 582
 
| 582
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PHA4_GFP_lemb
+
| Snyder_PHA4_GFP_lemb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2598
 
| 2598
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Tue Oct 26 01:00:00 BST 2010
 
| Tue Oct 26 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PHA4_POLII_FedL1
+
| Snyder_PHA4_POLII_FedL1
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 587
 
| 587
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PHA4_POLII_emb
+
| Snyder_PHA4_POLII_emb
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 586
 
| 586
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PHA4_StarvedL1_GFP
+
| Snyder_PHA4_StarvedL1_GFP
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 584
 
| 584
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PHA4_StarvedL1_POLII
+
| Snyder_PHA4_StarvedL1_POLII
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 588
 
| 588
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_PQM-1_GFP_L3
+
| Snyder_PQM-1_GFP_L3
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2623
 
| 2623
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Sat Oct 30 01:00:00 BST 2010
 
| Sat Oct 30 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_SKN-1_GFP_L1
+
| Snyder_SKN-1_GFP_L1
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2622
 
| 2622
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Tue Oct 26 01:00:00 BST 2010
 
| Tue Oct 26 01:00:00 BST 2010
|
 
 
|-
 
|-
| Snyder_UNC-130_GFP_L1
+
| Snyder_UNC-130_GFP_L1
| We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals.  Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
 
 
| 2430
 
| 2430
| binding_site_identification_design
 
| Mon Mar 02 00:00:00 GMT 2009
 
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Fri Nov 27 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
+
|- style="background:green; color:white"
|-
+
| UTRome_V2_3UTRs_multiple_evidences
| UTRome_V2_3UTRs_multiple_evidences
 
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2745
 
| 2745
| transcript_identification_design
 
| Tue Feb 16 00:00:00 GMT 2010
 
 
| Tue Feb 16 00:00:00 GMT 2010
 
| Tue Feb 16 00:00:00 GMT 2010
 
| Mon Nov 15 00:00:00 GMT 2010
 
| Mon Nov 15 00:00:00 GMT 2010
|
+
| Fabio Piano
 
|-
 
|-
| Young Adult Cephalic sheath (CEPsh) tiling array
+
| Young Adult Cephalic sheath (CEPsh) tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 660
 
| 660
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Fri Jun 25 01:00:00 BST 2010
 
| Fri Jun 25 01:00:00 BST 2010
|
 
 
|-
 
|-
| Young Adult N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| Young Adult N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2851
 
| 2851
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
|
 
 
|-
 
|-
| Young Adult reference (mockIP) tiling array
+
| Young Adult reference (mockIP) tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 656
 
| 656
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Fri Jun 25 01:00:00 BST 2010
 
| Fri Jun 25 01:00:00 BST 2010
|
 
 
|-
 
|-
| dauer daf-2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| dauer daf-2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2852
 
| 2852
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
|
 
 
|-
 
|-
| dauer entry daf-2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| dauer entry daf-2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2853
 
| 2853
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
|
 
 
|-
 
|-
| dauer exit daf-2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| dauer exit daf-2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2854
 
| 2854
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
|
 
 
|-
 
|-
| early embryo 20dC 0-4hrs post-fertilization N2 tiling array
+
| early embryo 20dC 0-4hrs post-fertilization N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 476
 
| 476
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| early embryo N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| early embryo N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2855
 
| 2855
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
|
 
 
|-
 
|-
| embryo A-class motor neurons tiling array
+
| embryo A-class motor neurons tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 654
 
| 654
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Fri Jun 25 01:00:00 BST 2010
 
| Fri Jun 25 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo AVA neurons tiling array
+
| embryo AVA neurons tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 459
 
| 459
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo GABA motor neurons tiling array
+
| embryo GABA motor neurons tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 468
 
| 468
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo all cells reference tiling array
+
| embryo all cells reference tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 456
 
| 456
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo body wall muscle tiling array (v2)
+
| embryo body wall muscle tiling array (v2)
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 470
 
| 470
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo coelomocytes tiling array
+
| embryo coelomocytes tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 458
 
| 458
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo dopaminergic neurons tiling array
+
| embryo dopaminergic neurons tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 467
 
| 467
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo germline precursor cells tiling array
+
| embryo germline precursor cells tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 661
 
| 661
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Fri Jun 25 01:00:00 BST 2010
 
| Fri Jun 25 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo him-8 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| embryo him-8 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2856
 
| 2856
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
|
 
 
|-
 
|-
| embryo hypodermal cells tiling array
+
| embryo hypodermal cells tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 662
 
| 662
| transcript_identification_design
 
| Thu Nov 19 00:00:00 GMT 2009
 
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Thu Nov 19 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo intestine tiling array
+
| embryo intestine tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 457
 
| 457
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo panneural tiling array
+
| embryo panneural tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 455
 
| 455
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| embryo_BAG_neurons_tiling_array
+
| embryo_BAG_neurons_tiling_array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 2499
 
| 2499
| transcript_identification_design
 
| Wed Feb 10 00:00:00 GMT 2010
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
|
 
 
|-
 
|-
| embryo_PVC_neurons_tiling_array
+
| embryo_PVC_neurons_tiling_array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 2500
 
| 2500
| transcript_identification_design
 
| Tue Feb 16 00:00:00 GMT 2010
 
 
| Tue Feb 16 00:00:00 GMT 2010
 
| Tue Feb 16 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
|
 
 
|-
 
|-
| embryo_pharyngeal_muscle_tiling_array
+
| embryo_pharyngeal_muscle_tiling_array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 2548
 
| 2548
| transcript_identification_design
 
| Wed Feb 10 00:00:00 GMT 2010
 
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Wed Feb 10 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
 
| Mon Nov 08 00:00:00 GMT 2010
|
 
 
|-
 
|-
| gonad from young adult 20dC 42hrs post-L1 N2 tiling array
+
| gonad from young adult 20dC 42hrs post-L1 N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 481
 
| 481
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| late embryo 20dC 6-12hrs post-fertilization N2 tiling array
+
| late embryo 20dC 6-12hrs post-fertilization N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 479
 
| 479
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| late embryo N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
+
| late embryo N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
| Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts.  We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
 
 
| 2857
 
| 2857
| transcript_identification_design
 
| Thu Feb 18 00:00:00 GMT 2010
 
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Thu Feb 18 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
 
| Tue Nov 16 00:00:00 GMT 2010
|
 
 
|-
 
|-
| male L4 25dC 36hrs post-L1 CB4689 tiling array
+
| male L4 25dC 36hrs post-L1 CB4689 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 478
 
| 478
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| mid-L1_miRNA_expression_change
+
| mid-L1_miRNA_expression_change
| We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression during aging in C. elegans. RNAs were prepared from four diffrent timepoints during adulthood of C. elegans hermaphrodites, Day 0, 5, 8 and 12 post-L4 molt, and used for making cDNA libraries for small RNAs. Each library was sequenced using recent advances in high-throughput sequencing technology, Solexa. This study should lead to a better understanding of the aging process and age-related diseases.
 
 
| 2777
 
| 2777
| transcript_identification_design
 
| Sat Feb 13 00:00:00 GMT 2010
 
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Feb 13 00:00:00 GMT 2010
 
| Sat Nov 13 00:00:00 GMT 2010
 
| Sat Nov 13 00:00:00 GMT 2010
|
 
 
|-
 
|-
| pathogen Efaecalis 25dC 24hr exposure post-adulthood N2 tiling array
+
| pathogen Efaecalis 25dC 24hr exposure post-adulthood N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome tiling arrays. To understand how bacterial pathogens taken up by C. elegans may affect transcription, we grew young adult worms on various pathogenic bacterial strains for either 24 or 48 hours and measured transcription levels.  Simultaneously, young adult worms were also grown on non-pathogenic bacteria (OP50) as controls.
 
 
| 487
 
| 487
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| pathogen Pluminscens 25dC 24hr exposure post-adulthood N2 tiling array
+
| pathogen Pluminscens 25dC 24hr exposure post-adulthood N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome tiling arrays. To understand how bacterial pathogens taken up by C. elegans may affect transcription, we grew young adult worms on various pathogenic bacterial strains for either 24 or 48 hours and measured transcription levels.  Simultaneously, young adult worms were also grown on non-pathogenic bacteria (OP50) as controls.
 
 
| 486
 
| 486
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| pathogen Smarcescens 25dC 24hr exposure post-adulthood N2 tiling array
+
| pathogen Smarcescens 25dC 24hr exposure post-adulthood N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome tiling arrays. To understand how bacterial pathogens taken up by C. elegans may affect transcription, we grew young adult worms on various pathogenic bacterial strains for either 24 or 48 hours and measured transcription levels.  Simultaneously, young adult worms were also grown on non-pathogenic bacteria (OP50) as controls.
 
 
| 489
 
| 489
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| pathogen Smarcescens 25dC 48hr exposure post-adulthood N2 tiling array
+
| pathogen Smarcescens 25dC 48hr exposure post-adulthood N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome tiling arrays. To understand how bacterial pathogens taken up by C. elegans may affect transcription, we grew young adult worms on various pathogenic bacterial strains for either 24 or 48 hours and measured transcription levels.  Simultaneously, young adult worms were also grown on non-pathogenic bacteria (OP50) as controls.
 
 
| 488
 
| 488
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| pathogen control OP50 25dC 24hr exposure post-adulthood N2 tiling array
+
| pathogen control OP50 25dC 24hr exposure post-adulthood N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome tiling arrays. To understand how bacterial pathogens taken up by C. elegans may affect transcription, we grew young adult worms on various pathogenic bacterial strains for either 24 or 48 hours and measured transcription levels.  Simultaneously, young adult worms were also grown on non-pathogenic bacteria (OP50) as controls.
 
 
| 491
 
| 491
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
 
 
|-
 
|-
| pathogen control OP50 25dC 48hr exposure post-adulthood N2 tiling array
+
| pathogen control OP50 25dC 48hr exposure post-adulthood N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commercially available genome tiling arrays. To understand how bacterial pathogens taken up by C. elegans may affect transcription, we grew young adult worms on various pathogenic bacterial strains for either 24 or 48 hours and measured transcription levels.  Simultaneously, young adult worms were also grown on non-pathogenic bacteria (OP50) as controls.
 
 
| 490
 
| 490
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
+
|-style="background:green; color:white"
|-
+
| small RNA 454 sequencing of N2 young adults
| small RNA 454 sequencing of N2 young adults
 
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2831
 
| 2831
| transcript_identification_design
 
| Fri Feb 12 00:00:00 GMT 2010
 
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA 454 sequencing of eri-1(mg366)
+
| small RNA 454 sequencing of eri-1(mg366)
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2827
 
| 2827
| transcript_identification_design
 
| Fri Feb 12 00:00:00 GMT 2010
 
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA 454 sequencing of fer-1 unfertilized oocytes
+
| small RNA 454 sequencing of fer-1 unfertilized oocytes
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2832
 
| 2832
| transcript_identification_design
 
| Fri Feb 12 00:00:00 GMT 2010
 
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA 454 sequencing of glp-4(bn2)
+
| small RNA 454 sequencing of glp-4(bn2)
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2828
 
| 2828
| transcript_identification_design
 
| Fri Feb 12 00:00:00 GMT 2010
 
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA 454 sequencing of him-8 sperm
+
| small RNA 454 sequencing of him-8 sperm
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2829
 
| 2829
| transcript_identification_design
 
| Fri Feb 12 00:00:00 GMT 2010
 
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA Illumina sequencing of N2 embryos
+
| small RNA Illumina sequencing of N2 embryos
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2826
 
| 2826
| transcript_identification_design
 
| Sun Feb 14 00:00:00 GMT 2010
 
 
| Sun Feb 14 00:00:00 GMT 2010
 
| Sun Feb 14 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA Illumina sequencing of N2 whole worms
+
| small RNA Illumina sequencing of N2 whole worms
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2825
 
| 2825
| transcript_identification_design
 
| Fri Feb 12 00:00:00 GMT 2010
 
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA Illumina sequencing of eri-1(mg366)
+
| small RNA Illumina sequencing of eri-1(mg366)
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2821
 
| 2821
| transcript_identification_design
 
| Fri Feb 12 00:00:00 GMT 2010
 
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Thu Nov 11 00:00:00 GMT 2010
 
| Thu Nov 11 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA Illumina sequencing of fer-1 unfertilized oocytes
+
| small RNA Illumina sequencing of fer-1 unfertilized oocytes
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2830
 
| 2830
| transcript_identification_design
 
| Sun Feb 14 00:00:00 GMT 2010
 
 
| Sun Feb 14 00:00:00 GMT 2010
 
| Sun Feb 14 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
 
| Tue Nov 02 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA Illumina sequencing of glp-4(bn2)
+
| small RNA Illumina sequencing of glp-4(bn2)
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2822
 
| 2822
| transcript_identification_design
 
| Fri Feb 12 00:00:00 GMT 2010
 
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Fri Feb 12 00:00:00 GMT 2010
 
| Thu Nov 11 00:00:00 GMT 2010
 
| Thu Nov 11 00:00:00 GMT 2010
|
+
|       Fabio Piano
|-
+
|-style="background:green; color:white"
| small RNA Illumina sequencing of him-8 sperm
+
| small RNA Illumina sequencing of him-8 sperm
| The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues.
 
 
| 2823
 
| 2823
| transcript_identification_design
 
| Sun Feb 14 00:00:00 GMT 2010
 
 
| Sun Feb 14 00:00:00 GMT 2010
 
| Sun Feb 14 00:00:00 GMT 2010
 
| Thu Nov 11 00:00:00 GMT 2010
 
| Thu Nov 11 00:00:00 GMT 2010
|
+
|       Fabio Piano
 
|-
 
|-
| small RNA N2 embryos RNA-seq
+
| small RNA N2 embryos RNA-seq
| We aim to examine the changes in expression of non-coding small RNAs, including miRNAs and piRNAs/21U-RNAs, during development and aging, and in the different sexes of C. elegans using high-throughput sequencing technology Solexa. Additionally, we will identify novel small RNAs, especially novel miRNA candidates.
 
 
| 634
 
| 634
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| small RNA N2 mid-L1 RNA-seq
+
| small RNA N2 mid-L1 RNA-seq
| We aim to examine the changes in expression of non-coding small RNAs, including miRNAs and piRNAs/21U-RNAs, during development and aging, and in the different sexes of C. elegans using high-throughput sequencing technology Solexa. Additionally, we will identify novel small RNAs, especially novel miRNA candidates.
 
 
| 635
 
| 635
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| small RNA N2 mid-L2 RNA-seq
+
| small RNA N2 mid-L2 RNA-seq
| We aim to examine the changes in expression of non-coding small RNAs, including miRNAs and piRNAs/21U-RNAs, during development and aging, and in the different sexes of C. elegans using high-throughput sequencing technology Solexa. Additionally, we will identify novel small RNAs, especially novel miRNA candidates.
 
 
| 636
 
| 636
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| small RNA N2 mid-L3 RNA-seq
+
| small RNA N2 mid-L3 RNA-seq
| We aim to examine the changes in expression of non-coding small RNAs, including miRNAs and piRNAs/21U-RNAs, during development and aging, and in the different sexes of C. elegans using high-throughput sequencing technology Solexa. Additionally, we will identify novel small RNAs, especially novel miRNA candidates.
 
 
| 637
 
| 637
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| small RNA N2 mid-L4 RNA-seq
+
| small RNA N2 mid-L4 RNA-seq
| We aim to examine the changes in expression of non-coding small RNAs, including miRNAs and piRNAs/21U-RNAs, during development and aging, and in the different sexes of C. elegans using high-throughput sequencing technology Solexa. Additionally, we will identify novel small RNAs, especially novel miRNA candidates.
 
 
| 638
 
| 638
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| small RNA N2 young adult RNA-seq
+
| small RNA N2 young adult RNA-seq
| We aim to examine the changes in expression of non-coding small RNAs, including miRNAs and piRNAs/21U-RNAs, during development and aging, and in the different sexes of C. elegans using high-throughput sequencing technology Solexa. Additionally, we will identify novel small RNAs, especially novel miRNA candidates.
 
 
| 639
 
| 639
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| small RNA him-8 males RNA-seq
+
| small RNA him-8 males RNA-seq
| We aim to examine the changes in expression of non-coding small RNAs, including miRNAs and piRNAs/21U-RNAs, during development and aging, and in the different sexes of C. elegans using high-throughput sequencing technology Solexa. Additionally, we will identify novel small RNAs, especially novel miRNA candidates.
 
 
| 640
 
| 640
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Mon Mar 15 00:00:00 GMT 2010
 
| Mon Mar 15 00:00:00 GMT 2010
|
 
 
|-
 
|-
| small RNAs from living one cell C. elegans embryos (GSM427345)
+
| small RNAs from living one cell C. elegans embryos (GSM427345)
| We devised a method to collect various staged C. elegans embryos by fluorescence-activated cell sorting (eFACS).  We combined eFACS with second-generation sequencing to profile the embryonic expression of small, noncoding RNAs.  We aim to discover complex changes in the expression between and within almost all classes of small rnAs, including micrornAs and 26G-RNAs, during embryogenesis.
 
 
| 2489
 
| 2489
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Tue Aug 17 01:00:00 BST 2010
 
| Tue Aug 17 01:00:00 BST 2010
|
 
 
|-
 
|-
| smallRNA from mixed-stage embryos (GSM427346)
+
| smallRNA from mixed-stage embryos (GSM427346)
| We devised a method to collect various staged C. elegans embryos by fluorescence-activated cell sorting (eFACS).  We combined eFACS with second-generation sequencing to profile the embryonic expression of small, noncoding RNAs.  We aim to discover complex changes in the expression between and within almost all classes of small rnAs, including micrornAs and 26G-RNAs, during embryogenesis.
 
 
| 2483
 
| 2483
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Mon Aug 16 01:00:00 BST 2010
 
| Mon Aug 16 01:00:00 BST 2010
|
 
 
|-
 
|-
| smallRNAs from older, fixed C. elegans embryos (GSM427344)
+
| smallRNAs from older, fixed C. elegans embryos (GSM427344)
| We devised a method to collect various staged C. elegans embryos by fluorescence-activated cell sorting (eFACS).  We combined eFACS with second-generation sequencing to profile the embryonic expression of small, noncoding RNAs.  We aim to discover complex changes in the expression between and within almost all classes of small rnAs, including micrornAs and 26G-RNAs, during embryogenesis.
 
 
| 2488
 
| 2488
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Tue Aug 17 01:00:00 BST 2010
 
| Tue Aug 17 01:00:00 BST 2010
|
 
 
|-
 
|-
| smallRNAs from one cell stage C. elegans embryos (GSM427301)
+
| smallRNAs from one cell stage C. elegans embryos (GSM427301)
| We devised a method to collect various staged C. elegans embryos by fluorescence-activated cell sorting (eFACS).  We combined eFACS with second-generation sequencing to profile the embryonic expression of small, noncoding RNAs.  We aim to discover complex changes in the expression between and within almost all classes of small rnAs, including micrornAs and 26G-RNAs, during embryogenesis.
 
 
| 2486
 
| 2486
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Tue Aug 17 01:00:00 BST 2010
 
| Tue Aug 17 01:00:00 BST 2010
|
 
 
|-
 
|-
| smallRNAs from post-gastrulation C. elegans embryos (GSM427332)
+
| smallRNAs from post-gastrulation C. elegans embryos (GSM427332)
| We devised a method to collect various staged C. elegans embryos by fluorescence-activated cell sorting (eFACS).  We combined eFACS with second-generation sequencing to profile the embryonic expression of small, noncoding RNAs.  We aim to discover complex changes in the expression between and within almost all classes of small rnAs, including micrornAs and 26G-RNAs, during embryogenesis.
 
 
| 2487
 
| 2487
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Tue Aug 17 01:00:00 BST 2010
 
| Tue Aug 17 01:00:00 BST 2010
|
 
 
|-
 
|-
| smallRNAs from two-to-four cell C. elegans embryos (GSM427297)
+
| smallRNAs from two-to-four cell C. elegans embryos (GSM427297)
| We devised a method to collect various staged C. elegans embryos by fluorescence-activated cell sorting (eFACS).  We combined eFACS with second-generation sequencing to profile the embryonic expression of small, noncoding RNAs.  We aim to discover complex changes in the expression between and within almost all classes of small rnAs, including micrornAs and 26G-RNAs, during embryogenesis.
 
 
| 2485
 
| 2485
| transcript_identification_design
 
| Wed Nov 18 00:00:00 GMT 2009
 
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Wed Nov 18 00:00:00 GMT 2009
 
| Tue Aug 17 01:00:00 BST 2010
 
| Tue Aug 17 01:00:00 BST 2010
|
 
 
|-
 
|-
| soma-only mid-L4 25dC 36hrs post-L1 JK1107 tiling array
+
| soma-only mid-L4 25dC 36hrs post-L1 JK1107 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 485
 
| 485
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
|
+
|       Valerie Reinke
 
|-
 
|-
| young adult 25dC 42hrs post-L1 N2 tiling array
+
| young adult 25dC 42hrs post-L1 N2 tiling array
| Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
 
 
| 475
 
| 475
| transcript_identification_design
 
| Tue Nov 17 00:00:00 GMT 2009
 
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Tue Nov 17 00:00:00 GMT 2009
 
| Wed Jun 23 01:00:00 BST 2010
 
| Wed Jun 23 01:00:00 BST 2010
 +
|      Valerie Reinke
 
|}
 
|}
  
Line 3,010: Line 1,580:
  
 
See [[ModENCODE Analysis & metadata discussion]]
 
See [[ModENCODE Analysis & metadata discussion]]
 +
 +
 +
 +
[[Category:Curation]]

Latest revision as of 17:46, 16 August 2010

This is a summary of what we need to get out of modENCODE

5 main areas

The Transcriptome - Gary has been working on the Waterston/Hillier RNAseq data
Chromatin Function
Histone Variants
Regulatory Elements
The 3' UTRome - I will incorporate the UTR objects and the polyA features

Datasets available from modmine: note, I haven't coded them yet.......

title DCCid publicReleaseDate embargoDate PI
3' UTR 454 sequencing pilot - alignments 992 Thu Nov 12 00:00:00 GMT 2009 Tue Aug 03 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - L1 - alignments 2327 Thu Nov 12 00:00:00 GMT 2009 Fri Aug 06 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - L1 - sequences 2455 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - L2 - alignments 2328 Thu Nov 12 00:00:00 GMT 2009 Fri Aug 06 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - L2 - sequences 2456 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - L3 - alignments 2329 Fri Nov 13 00:00:00 GMT 2009 Tue Aug 03 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - L3 - sequences 2457 Tue Nov 03 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - L4 - alignments 2330 Thu Nov 12 00:00:00 GMT 2009 Fri Aug 06 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - L4 - sequences 2458 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - daf-11 - alignments 2334 Fri Nov 13 00:00:00 GMT 2009 Tue Aug 03 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - daf-11 - sequences 2464 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - daf-2 - alignments 2335 Fri Nov 13 00:00:00 GMT 2009 Tue Aug 03 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - daf-2 - sequences 2461 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - daf-7 - alignments 2336 Fri Nov 13 00:00:00 GMT 2009 Tue Aug 03 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - daf-7 - sequences 2462 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - daf-9 - alignments 2337 Fri Nov 13 00:00:00 GMT 2009 Fri Aug 06 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - daf-9 - sequences 2463 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - embryo - alignments 2331 Thu Nov 12 00:00:00 GMT 2009 Fri Aug 06 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - embryo - sequences 2465 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - hermaphrodite adult - alignments 2332 Fri Nov 13 00:00:00 GMT 2009 Tue Aug 03 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - hermaphrodite adult - sequences 2460 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - male adult - alignments 2333 Fri Nov 13 00:00:00 GMT 2009 Fri Aug 06 01:00:00 BST 2010 Fabio Piano
3' UTR Staged 454 Sequencing - male adult - sequences 2459 Wed Nov 04 00:00:00 GMT 2009 Mon Jul 19 01:00:00 BST 2010 Fabio Piano
3' UTRome 454 sequencing & alignment 2482 Mon Nov 16 00:00:00 GMT 2009 Mon Aug 09 01:00:00 BST 2010 Fabio Piano
3' UTRome Solexa sequencing & alignment 2484 Mon Nov 16 00:00:00 GMT 2009 Mon Aug 09 01:00:00 BST 2010 Fabio Piano
3' UTRome sample pools 2501 Thu Nov 19 00:00:00 GMT 2009 Mon Aug 09 01:00:00 BST 2010 Fabio Piano
3'UTR 454 sequencing pilot - Level 1 896 Tue Nov 03 00:00:00 GMT 2009 Fri Jun 04 01:00:00 BST 2010 Fabio Piano
3'UTRome CEUP1 sequences, alignments, annotation 515 Mon Nov 16 00:00:00 GMT 2009 Wed Aug 04 01:00:00 BST 2010 Fabio Piano
600_mM_Embryonic_Salt_Extracted_Chromatin 2532 Sun Nov 29 00:00:00 GMT 2009 Fri Aug 27 01:00:00 BST 2010
600_mM_Embryonic_Salt_Extracted_Chromatin_Pellet 2533 Sun Nov 29 00:00:00 GMT 2009 Fri Aug 27 01:00:00 BST 2010
80_mM_Embryonic_Salt_Extracted_Chromatin 2531 Sun Nov 29 00:00:00 GMT 2009 Fri Aug 27 01:00:00 BST 2010
Adult spe-9 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2850 Thu Feb 18 00:00:00 GMT 2010 Tue Nov 16 00:00:00 GMT 2010
Adult_Mononucleosomes 2538 Sun Nov 29 00:00:00 GMT 2009 Fri Aug 27 01:00:00 BST 2010
Ahringer_L3_Worm_Samples_1 2539 Mon Aug 10 01:00:00 BST 2009 Sun Aug 29 01:00:00 BST 2010
Ahringer_L3_Worm_Samples_2 2540 Mon Aug 10 01:00:00 BST 2009 Mon Aug 30 01:00:00 BST 2010
C. elegans Intron Identification set.20090106.2_3_2_2_4_3_3_2_2 448 Tue Nov 17 00:00:00 GMT 2009 Sun Oct 25 01:00:00 BST 2009
C. elegans Intron Identification set.20090106.2_3_2_2_4_4_3_2_2 446 Tue Nov 17 00:00:00 GMT 2009 Sun Oct 25 01:00:00 BST 2009
C. elegans Intron Identification set.20090106.2_3_2_2_5_3_3_2_2 447 Tue Nov 17 00:00:00 GMT 2009 Sat Oct 31 00:00:00 GMT 2009
C. elegans Intron Identification.set.20090106.2_3_2_2_3_2_2_2_2 445 Tue Nov 17 00:00:00 GMT 2009 Sun Oct 25 01:00:00 BST 2009
CBP-1_N2_MXEMB_(SDQ3582_CBP1_N2_MXEMB) 2767 Mon Feb 01 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
DPY-26_N2_Mixed_Embryos_(JL00003_DPY26_N2_MXEMB) 334 Mon Nov 30 00:00:00 GMT 2009 Mon Aug 23 01:00:00 BST 2010
DPY-27_N2_L4(JL00001_DPY27_N2_L4) 630 Thu Nov 26 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
DPY-27_N2_MXEMB_1A_(JL00001_DPY27_N2_MXEMB_1_A) 578 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
DPY-27_N2_Mixed_Embryos (JL00001_DPY27_N2_MXEMB) 90 Sun Feb 11 00:00:00 GMT 2007 Mon Aug 16 01:00:00 BST 2010
DPY-28_N2_MXEMB_(JL00012_DPY28_N2_MXEMB) 644 Thu Nov 26 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
DPY27_11DH(I;X)_MXEMB(JL00001_DPY27_11DH_MXEMB) 693 Wed Feb 03 00:00:00 GMT 2010 Mon Aug 16 01:00:00 BST 2010
DPY27_YPT41(II;X)_MXEMB(JL00001_DPY27_YPT41_MXEMB) 695 Wed Feb 03 00:00:00 GMT 2010 Mon Aug 16 01:00:00 BST 2010
DPY27_YPT47(V;X)_MXEMB(JL00001_DPY27_YPT47_MXEMB) 696 Thu Nov 26 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Day0_spe-9 Solexa Raw Data SOAP-aligned 2730 Sat Feb 13 00:00:00 GMT 2010 Mon Nov 08 00:00:00 GMT 2010
Day12_spe-9 Solexa Raw Data SOAP-aligned 2734 Sat Feb 13 00:00:00 GMT 2010 Mon Nov 08 00:00:00 GMT 2010
Day12_spe-9_23dC_miRNA_expression_change 2788 Sat Feb 13 00:00:00 GMT 2010 Sat Nov 13 00:00:00 GMT 2010
Day5_spe-9 Solexa Raw Data SOAP-aligned 2732 Sat Feb 13 00:00:00 GMT 2010 Mon Nov 08 00:00:00 GMT 2010
Day8_spe-9 Solexa Raw Data SOAP-aligned 2733 Sat Feb 13 00:00:00 GMT 2010 Mon Nov 08 00:00:00 GMT 2010
Embryo_miRNA_expression_change 2776 Sat Feb 13 00:00:00 GMT 2010 Sat Nov 13 00:00:00 GMT 2010
Embryonic_Mononucleosomes 2537 Sun Nov 29 00:00:00 GMT 2009 Fri Aug 27 01:00:00 BST 2010
H3.3_350_mM_Salt_Extracted_Chromatin 2535 Sun Nov 29 00:00:00 GMT 2009 Fri Aug 27 01:00:00 BST 2010
H3.3_600_mM_Salt_Extracted_Chromatin 2536 Sun Nov 29 00:00:00 GMT 2009 Fri Aug 27 01:00:00 BST 2010
H3.3_80_mM_Salt_Extracted_Chromatin 2534 Sun Nov 29 00:00:00 GMT 2009 Fri Aug 27 01:00:00 BST 2010
HCP-3_CENP-A_Mixed_Embryos_(OD00001_HCP3_N2_MXEMB) 194 Wed Feb 03 00:00:00 GMT 2010 Mon Aug 23 01:00:00 BST 2010
HCP-3_CENP-A_N2_EEMB_(OD00079_HCP3_N2_EEMB) 2541 Fri Dec 04 00:00:00 GMT 2009 Thu Sep 09 01:00:00 BST 2010
HCP-3_CENP-A_N2_MXEMB_(OD00079_HCP3_N2_MXEMB) 2446 Thu Oct 15 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
HTZ-1_N2_Mixed_Embryos (BK00001_HTZ1_N2_MXEMB) 43 Mon Jul 28 01:00:00 BST 2008 Mon Aug 16 01:00:00 BST 2010
Histone_H3K20me1_N2_EEMB_(AB9051_H4K20ME1104513_N2_EEMB) 2765 Mon Feb 01 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Histone_H3K27ac_N2_EEMB_(AB4729_H3K27AC361571_N2_EEMB) 2740 Sun Jan 31 00:00:00 GMT 2010 Fri Oct 29 01:00:00 BST 2010
Histone_H3K27ac_N2_EEMB_(WA30634849_H3K27AC_N2_EEMB) 2727 Sun Jan 31 00:00:00 GMT 2010 Fri Oct 29 01:00:00 BST 2010
Histone_H3K27ac_N2_L3_(AB4729_H3K27AC361571_N2_L3) 2771 Mon Feb 15 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Histone_H3K27ac_N2_L3_(WA30634849_H3K27AC_N2_L3) 2773 Mon Feb 15 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Histone_H3K27me3_N2_L3_(HK00013_H3K27ME31E7_N2_L3) 2400 Thu Oct 08 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K36me1_N2_EEMB_(AB9048_H3K36ME1206009_N2_EEMB) 2604 Sun Jan 31 00:00:00 GMT 2010 Thu Oct 21 01:00:00 BST 2010
Histone_H3K36me2_N2_EEMB_(AB9049_H3K36ME2608457_N2_EEMB) 2338 Wed Sep 30 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K36me2_N2_EEMB_(HK00012_H3K36ME22C3_N2_EEMB) 909 Tue Sep 22 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K36me2_N2_L3_(HK00012_H3K36ME22C3_N2_L3) 2399 Wed Oct 07 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K36me3_N2_EEMB_(HK00001_H3K36ME313C9_N2_EEMB) 973 Tue Sep 22 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K36me3_N2_L3_(HK00001_H3K36ME313C9_N2_L3) 2401 Thu Oct 08 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K36me3_from_N2_L3_larvae_(AB9050_H3K36ME3_N2_L3) 175 Mon Feb 15 00:00:00 GMT 2010 Mon Aug 23 01:00:00 BST 2010
Histone_H3K4me1_N2_EEMB_(AB8895_H3K4ME1733246_N2_EEMB) 2726 Sun Jan 31 00:00:00 GMT 2010 Fri Oct 29 01:00:00 BST 2010
Histone_H3K4me1_N2_L3_(AB8895_H3K4ME1733246_N2_L3) 2775 Mon Feb 15 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Histone_H3K4me2_N2_EEMB_(MP07030_H3K4ME2DAM1570816_N2_EEMB) 2645 Sun Jan 31 00:00:00 GMT 2010 Tue Oct 26 01:00:00 BST 2010
Histone_H3K4me2_N2_EEMB_(WA30834809_H3K4ME2_N2_EEMB) 2445 Wed Oct 14 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K4me2_N2_L3_(WA30834809_H3K4ME2_N2_L3) 2402 Thu Oct 08 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K4me3_N2_EEMB_(WA30534819_H3K4ME3_N2_EEMB) 2311 Tue Sep 22 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K4me3_from_N2_L3_larvae_(AR0169_H3K4me3_N2_L3) 176 Mon Feb 15 00:00:00 GMT 2010 Mon Aug 23 01:00:00 BST 2010
Histone_H3K79me1_N2_EEMB_(AB2886_H3K79ME1361912_N2_EEMB) 2410 Mon Oct 12 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K79me2_N2_EEMB_(AB3594_H3K79ME2346021_N2_EEMB) 2442 Tue Oct 13 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K79me3_N2_EEMB_(AB2621_H3K79ME3361576_N2_EEMB) 2443 Tue Oct 13 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K9ac_N2_EEMB_(AB4441_H3K9AC_N2_EEMB) 2728 Sun Jan 31 00:00:00 GMT 2010 Fri Oct 29 01:00:00 BST 2010
Histone_H3K9me1_N2_EEMB_(AB8896_H3K9ME1104560_N2_EEMB) 2739 Sun Jan 31 00:00:00 GMT 2010 Fri Oct 29 01:00:00 BST 2010
Histone_H3K9me1_N2_EEMB_(AB9045_H3K9ME1291918_N2_EEMB) 2646 Sun Jan 31 00:00:00 GMT 2010 Tue Oct 26 01:00:00 BST 2010
Histone_H3K9me1_N2_L3_(AB9045_H3K9ME1291918_N2_L3) 2770 Mon Feb 15 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Histone_H3K9me2_N2_EEMB_(HK00008_H3K9ME26D11_N2_EEMB) 2444 Wed Oct 14 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K9me2_N2_L3_(HK00008_H3K9ME26D11_N2_L3) 2406 Sun Oct 11 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K9me3_N2_EEMB_1_(UP07442_H3K9ME3_N2_EEMB) 691 Wed Feb 03 00:00:00 GMT 2010 Mon Aug 16 01:00:00 BST 2010
Histone_H3K9me3_N2_EEMB_2_(AB8898_H3K9ME3339901_N2_EEMB) 2339 Wed Sep 30 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K9me3_N2_EEMB_2_(HK00009_H3K9ME32F3_N2_EEMB) 982 Tue Sep 22 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K9me3_N2_L3_(HK00009_H3K9ME32F3_N2_L3) 2398 Wed Oct 07 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3K9me3_from_N2_L3_larvae_(UP07442_H3K9ME3_N2_L3) 188 Mon Feb 15 00:00:00 GMT 2010 Mon Aug 23 01:00:00 BST 2010
Histone_H3_N2_EEMB_1_(AR0144_H3144_N2_EEMB) 2312 Wed Sep 23 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3_N2_EEMB_2_(AB1791_H3609253_N2_EEMB) 2313 Wed Sep 23 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3_N2_L3_(AB1791_H3_N2_L3_new) 2409 Mon Oct 12 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3_N2_L3_1_(AR0144_H3144_N2_L3_LM) 2408 Sun Oct 11 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H3_N2_L3_2_(AR0144_H3144_N2_L3) 2407 Sun Oct 11 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Histone_H4K20me1_N2_L3_(AB9051_H4K20ME1104513_N2_L3) 2784 Mon Feb 15 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Histone_H4K8ac_N2_L3_(AB15823_H4K8AC487128_N2_L3) 2774 Mon Feb 15 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Histone_H4_N2_L3_(MP05858_H4DAM1636076_N2_L3) 2768 Mon Feb 15 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Histone_H4_Tetra_ac_N2_EEMB_(LPAR109_H4TETRAAC109_N2_EEMB) 2766 Mon Feb 01 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Intron Confirmation Chromosome I 2010-01-28 2718 Mon Feb 08 00:00:00 GMT 2010 Mon Nov 08 00:00:00 GMT 2010
Intron Confirmation Chromosome II 2009-09-21 2304 Tue Nov 17 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
L1 20dC 0hrs post-L1 N2 tiling array 484 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L1 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2860 Thu Feb 18 00:00:00 GMT 2010 Wed Nov 17 00:00:00 GMT 2010
L1 lin-35(n745) integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, and wormbase splice junctions 2858 Thu Feb 18 00:00:00 GMT 2010 Tue Nov 16 00:00:00 GMT 2010
L2 25dC 14hrs post-L1 N2 tiling array 472 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L2 A-class neuron tiling array 469 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L2 GABA neurons tiling array 466 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L2 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2861 Thu Feb 18 00:00:00 GMT 2010 Wed Nov 17 00:00:00 GMT 2010
L2 body wall muscle tiling array 465 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L2 coelomocytes tiling array 657 Wed Nov 18 00:00:00 GMT 2009 Fri Jun 25 01:00:00 BST 2010
L2 excretory cell tiling array 464 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L2 glutamate receptor expressing neurons tiling array 658 Wed Nov 18 00:00:00 GMT 2009 Fri Jun 25 01:00:00 BST 2010
L2 intestine tiling array 463 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L2 panneural tiling array 462 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L2 polyA enriched 20dC 14hrs post-L1 N2 tiling array 477 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L2 reference (mockIP) tiling array 461 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L3 25dC 25hrs post-L1 N2 tiling array 474 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L3 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2862 Wed Feb 17 00:00:00 GMT 2010 Wed Nov 17 00:00:00 GMT 2010
L3-L4 PVD & OLL neurons tiling array 460 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L3-L4 dopaminergic neuron tiling array 655 Wed Nov 18 00:00:00 GMT 2009 Fri Jun 25 01:00:00 BST 2010
L3-L4 hypodermal cells tiling array 2454 Wed Nov 18 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
L3-L4 reference (mockIP) tiling array 659 Wed Nov 18 00:00:00 GMT 2009 Fri Jun 25 01:00:00 BST 2010
L4 25dC 36hrs post-L1 N2 tiling array 473 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
L4 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2863 Thu Feb 18 00:00:00 GMT 2010 Wed Nov 17 00:00:00 GMT 2010
L4 male integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2859 Thu Feb 18 00:00:00 GMT 2010 Wed Nov 17 00:00:00 GMT 2010
LEM-2_N2_MXEMB_(SDQ3891_LEM2_N2_MXEMB) 2729 Sun Jan 31 00:00:00 GMT 2010 Fri Oct 29 01:00:00 BST 2010
MES-4_FLAG_Early_Embryos_(SGF3165_FLAG_MES4FLAG_EEMB) 195 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 23 01:00:00 BST 2010
MES-4_N2_EEMB_(SDQ0791_MES4_N2_EEMB) 911 Tue Sep 22 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
MIX-1_N2_Mixed_Embryos_(JL00004_MIX1_N2_MXEMB) 336 Mon Nov 30 00:00:00 GMT 2009 Mon Aug 23 01:00:00 BST 2010
MRG-1_N2_EEMB_(SDQ0790_MRG1_N2_EEMB) 897 Tue Sep 22 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Mononucleosomes_JK1107_AD 2764 Mon Feb 15 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
Mononucleosomes_N2_MXEMB 2763 Mon Feb 15 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
NA_MES4FLAG_EEMB 202 Thu Jan 15 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
NPP-13_N2_MXEMB_(SDQ3897_NPP13_N2_MXEMB) 2738 Sun Jan 31 00:00:00 GMT 2010 Fri Oct 29 01:00:00 BST 2010
Negative_control_Antibody_N2_EEMB_(SS00050_IGG_N2_EEMB) 2382 Tue Feb 10 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Negative_control_No_Antibody_N2_EEMB_(NA_N2_EEMB) 2364 Wed Sep 30 01:00:00 BST 2009 Mon Aug 16 01:00:00 BST 2010
Negative_control_antibody_from_N2_L3_larvae_(JA00002_IGG_N2_L3) 179 Mon Feb 15 00:00:00 GMT 2010 Mon Aug 16 01:00:00 BST 2010
POL-2_CTD_Mixed_Embryos (ABAB5408_4H8_N2_MXEMB) 174 Mon Jun 02 01:00:00 BST 2008 Mon Aug 16 01:00:00 BST 2010
POL-2_N2_L4_(CVMMS126R_8WG16_N2_L4) 599 Mon Feb 23 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
POL-2_N2_Mixed_Embryos (CVMMS126R_8WG16_N2_MXEMB) 44 Mon Jul 28 01:00:00 BST 2008 Mon Aug 16 01:00:00 BST 2010
Pol_II_CTD_N2_EEMB_(ABAB817_8WG16_N2_EEMB) 663 Wed Feb 03 00:00:00 GMT 2010 Mon Aug 16 01:00:00 BST 2010
RNA-Seq - pathogen Harposporium 25dC 24hr exposure post-adulthood N2 genelets 2587 Mon Feb 01 00:00:00 GMT 2010 Thu Oct 21 01:00:00 BST 2010
RNA-Seq - pathogen Harposporium 25dC 24hr exposure post-adulthood N2 sequences & alignments 2580 Sun Jan 31 00:00:00 GMT 2010 Tue Oct 19 01:00:00 BST 2010
RNA-Seq - pathogen Harposporium control OP50 25dC 24hr exposure post-adulthood N2 genelets 2588 Tue Feb 02 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
RNA-Seq - pathogen Harposporium control OP50 25dC 24hr exposure post-adulthood N2 sequences & alignments 2581 Tue Feb 02 00:00:00 GMT 2010 Tue Oct 19 01:00:00 BST 2010
RNA-Seq - pathogen Smacescens control OP50 25dC 24hr exposure post-adulthood N2 genelets 2591 Tue Feb 02 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
RNA-Seq - pathogen Smacescens control OP50 25dC 24hr exposure post-adulthood N2 sequences & alignments 2584 Tue Feb 02 00:00:00 GMT 2010 Wed Oct 20 01:00:00 BST 2010
RNA-seq - pathogen Smacescens 25dC 24hr exposure post-adulthood N2 genelets 2589 Tue Feb 02 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
RNA-seq - pathogen Smacescens 25dC 24hr exposure post-adulthood N2 sequences & alignment 2582 Tue Feb 02 00:00:00 GMT 2010 Wed Oct 20 01:00:00 BST 2010
RNA-seq - soma-only mid-L4 25dC 36hrs post-L1 JK1107 genelets 2590 Tue Feb 02 00:00:00 GMT 2010 Mon Nov 01 00:00:00 GMT 2010
RNA-seq - soma-only mid-L4 25dC 36hrs post-L1 JK1107 sequences & alignments 2583 Wed Jan 20 00:00:00 GMT 2010 Wed Oct 20 01:00:00 BST 2010
RNAseq - 0911 aggregate fourteen stages - non-redundant exons 2647 Thu Feb 18 00:00:00 GMT 2010 Thu Nov 18 00:00:00 GMT 2010
RNAseq - Adult spe-9 23dC 8days post-L4 molt genelets revised 2835 Thu Feb 04 00:00:00 GMT 2010 Wed Nov 03 00:00:00 GMT 2010
RNAseq - Adult spe-9 23dC 8days post-L4 molt sequences & alignment 2345 Fri Nov 13 00:00:00 GMT 2009 Thu Aug 12 01:00:00 BST 2010
RNAseq - Young Adult 25dC 46hrs post-L1 genelets revised 2836 Thu Feb 04 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - Young Adult 25dC 46hrs post-L1 sequences & alignment 2354 Sun Nov 15 00:00:00 GMT 2009 Sat Aug 14 01:00:00 BST 2010
RNAseq - dauer daf-2 25dC 91hrs post-L1 genelets revised 2837 Fri Feb 05 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - dauer daf-2 25dC 91hrs post-L1 sequences & alignments 2347 Sat Nov 14 00:00:00 GMT 2009 Fri Aug 13 01:00:00 BST 2010
RNAseq - dauer entry daf-2 25dC 48hrs post-L1 genelets revised 2838 Fri Feb 05 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - dauer entry daf-2 25dC 48hrs post-L1 sequences & alignments 2387 Sun Nov 15 00:00:00 GMT 2009 Sat Aug 14 01:00:00 BST 2010
RNAseq - dauer exit daf-2 25dC 91hrs 15dC 12hrs post-L1 genelets revised 2839 Fri Feb 05 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - dauer exit daf-2 25dC 91hrs 15dC 12hrs post-L1 sequences & alignments 2349 Sat Nov 14 00:00:00 GMT 2009 Fri Aug 13 01:00:00 BST 2010
RNAseq - early embryo genelets revised 2840 Fri Feb 05 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - early embryo sequences & alignments 2321 Thu Nov 12 00:00:00 GMT 2009 Wed Aug 11 01:00:00 BST 2010
RNAseq - embryo him-8 20dC post-L1 genelets revised 2841 Fri Feb 05 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - embryo him-8 20dC post-L1 sequences & alignments 2346 Sat Nov 14 00:00:00 GMT 2009 Fri Aug 13 01:00:00 BST 2010
RNAseq - late embryo 20dC 4.5hrs post-early embryo genelets revised 2842 Wed Feb 10 00:00:00 GMT 2010 Tue Nov 09 00:00:00 GMT 2010
RNAseq - late embryo 20dC 4.5hrs post-early embryo sequences & alignments 2324 Fri Nov 13 00:00:00 GMT 2009 Thu Aug 12 01:00:00 BST 2010
RNAseq - lin-35(n745) mid-L1 25dC 4.0hrs post-L1 genelets revised 2843 Fri Feb 05 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - lin-35(n745) mid-L1 25dC 4.0hrs post-L1 sequences & alignments 2343 Fri Nov 13 00:00:00 GMT 2009 Thu Aug 12 01:00:00 BST 2010
RNAseq - male mid-L4 dpy28(y1);him-8(e1489) 25dC 30hrs post-L1 genelets revised 2844 Fri Feb 05 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - male mid-L4 dpy28(y1);him-8(e1489) 25dC 30hrs post-L1 sequences & alignments 2325 Fri Nov 13 00:00:00 GMT 2009 Thu Aug 12 01:00:00 BST 2010
RNAseq - mid-L1 20dC 4hrs post-L1 genelets revised 2845 Thu Feb 11 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - mid-L1 20dC 4hrs post-L1 sequences & alignments 2326 Fri Nov 13 00:00:00 GMT 2009 Thu Aug 12 01:00:00 BST 2010
RNAseq - mid-L2 25dC 14 hrs post-L1 sequences & alignments 2351 Thu Nov 19 00:00:00 GMT 2009 Fri Aug 13 01:00:00 BST 2010
RNAseq - mid-L2 25dC 14hrs post-L1 genelets revised 2846 Thu Feb 11 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - mid-L3 25dC 25hrs post-L1 genelets revised 2847 Fri Feb 05 00:00:00 GMT 2010 Thu Nov 04 00:00:00 GMT 2010
RNAseq - mid-L3 25dC 25hrs post-L1 sequences & alignments 2352 Fri Nov 20 00:00:00 GMT 2009 Fri Aug 13 01:00:00 BST 2010
RNAseq - mid-L4 25dC 36hrs post-L1 genelets revised 2848 Fri Feb 12 00:00:00 GMT 2010 Tue Nov 09 00:00:00 GMT 2010
RNAseq - mid-L4 25dC 36hrs post-L1 sequences & alignments 2353 Fri Nov 20 00:00:00 GMT 2009 Sat Aug 14 01:00:00 BST 2010
SDC-2_N2_MXEMB_(SDQ3146_SDC2_N2_MXEMB) 645 Mon Nov 30 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
SDC-2_N2_Mixed_Embryos (JL00005_SDC2_N2_MXEMB) 338 Mon Feb 23 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
SDC-3_N2_MXEMB_1A_(JL00002_SDC3_N2_MXEMB_1_A) 553 Thu Nov 26 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
SDC-3_N2_MXEMB_1B_(JL00002_SDC3_N2_MXEMB_1_B) 575 Thu Nov 26 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
SDC-3_N2_Mixed_Embryos_(JL00002_SDC3_N2_MXEMB) 127 Sun Feb 11 00:00:00 GMT 2007 Mon Aug 16 01:00:00 BST 2010
SDC3_YPT47(V;X)_MXEMB(JL00002_SDC3_YPT47_MXEMB) 701 Thu Nov 26 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_ALR-1_GFP_L2 2434 Thu Nov 26 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_AMA1_GFP_L4YA 589 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_AMA1_POLII_L4YA 590 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_BLMP-1_GFP_L1 2612 Wed Feb 10 00:00:00 GMT 2010 Tue Oct 26 01:00:00 BST 2010
Snyder_CEH-14_GFP_L2 734 Thu Nov 26 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_CEH-30_GFP_lemb 2620 Wed Feb 10 00:00:00 GMT 2010 Sat Oct 30 01:00:00 BST 2010
Snyder_DAF16_GFP_L4YA 591 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_DAF16_POLII_L4YA 592 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_DPY27_GFP_emb 2416 Fri Nov 20 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_EGL-27_GFP_L1 2621 Wed Feb 10 00:00:00 GMT 2010 Sat Oct 30 01:00:00 BST 2010
Snyder_EGL5_GFP_L3 2453 Sat Nov 28 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_EGL5_POLII_L3 2616 Thu Feb 11 00:00:00 GMT 2010 Tue Oct 26 01:00:00 BST 2010
Snyder_ELT-3_GFP_L1 2614 Wed Feb 10 00:00:00 GMT 2010 Tue Oct 26 01:00:00 BST 2010
Snyder_EOR-1_GFP_L3 2417 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_EOR-1_POLII_L3 2596 Wed Feb 17 00:00:00 GMT 2010 Fri Oct 22 01:00:00 BST 2010
Snyder_GEI11_GFP_L4 2451 Sat Nov 28 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_HLH-1_GFP_emb 2431 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_HLH-8_GFP_L3 2418 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_HLH-8_POLII_L3 2597 Thu Feb 11 00:00:00 GMT 2010 Fri Oct 22 01:00:00 BST 2010
Snyder_LIN-11_GFP_L2 2429 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_LIN-13_GFP_emb 2613 Wed Feb 10 00:00:00 GMT 2010 Tue Oct 26 01:00:00 BST 2010
Snyder_LIN-15B_GFP_L3 2610 Wed Feb 10 00:00:00 GMT 2010 Sat Oct 30 01:00:00 BST 2010
Snyder_LIN-39_GFP_L3 2432 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_MAB5_GFP_L3 593 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_MAB5_POLII_L3 594 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_MDL-1_GFP_L1 2601 Wed Feb 10 00:00:00 GMT 2010 Fri Oct 22 01:00:00 BST 2010
Snyder_MEP-1_GFP_emb 2600 Wed Feb 10 00:00:00 GMT 2010 Tue Oct 26 01:00:00 BST 2010
Snyder_N2_POLII_L1 2437 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_N2_POLII_L2 2438 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_N2_POLII_L3 2439 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_N2_POLII_L4 2440 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_N2_POLII_YA 2441 Sat Nov 28 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_N2_POLII_eemb 2435 Sat Nov 28 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_N2_POLII_lemb 2436 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_NHR-105_GFP_L3 2617 Wed Feb 10 00:00:00 GMT 2010 Sat Oct 30 01:00:00 BST 2010
Snyder_NHR-6_GFP_L2 2433 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_PES1_GFP_L4 2450 Sat Nov 28 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_PHA4_GFP_FedL1 585 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_PHA4_GFP_L2 2452 Thu Nov 26 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_PHA4_GFP_YA 2599 Wed Feb 10 00:00:00 GMT 2010 Fri Oct 22 01:00:00 BST 2010
Snyder_PHA4_GFP_emb 582 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_PHA4_GFP_lemb 2598 Wed Feb 10 00:00:00 GMT 2010 Tue Oct 26 01:00:00 BST 2010
Snyder_PHA4_POLII_FedL1 587 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_PHA4_POLII_emb 586 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_PHA4_StarvedL1_GFP 584 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_PHA4_StarvedL1_POLII 588 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
Snyder_PQM-1_GFP_L3 2623 Wed Feb 10 00:00:00 GMT 2010 Sat Oct 30 01:00:00 BST 2010
Snyder_SKN-1_GFP_L1 2622 Wed Feb 10 00:00:00 GMT 2010 Tue Oct 26 01:00:00 BST 2010
Snyder_UNC-130_GFP_L1 2430 Fri Nov 27 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
UTRome_V2_3UTRs_multiple_evidences 2745 Tue Feb 16 00:00:00 GMT 2010 Mon Nov 15 00:00:00 GMT 2010 Fabio Piano
Young Adult Cephalic sheath (CEPsh) tiling array 660 Wed Nov 18 00:00:00 GMT 2009 Fri Jun 25 01:00:00 BST 2010
Young Adult N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2851 Thu Feb 18 00:00:00 GMT 2010 Tue Nov 16 00:00:00 GMT 2010
Young Adult reference (mockIP) tiling array 656 Wed Nov 18 00:00:00 GMT 2009 Fri Jun 25 01:00:00 BST 2010
dauer daf-2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2852 Thu Feb 18 00:00:00 GMT 2010 Tue Nov 16 00:00:00 GMT 2010
dauer entry daf-2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2853 Thu Feb 18 00:00:00 GMT 2010 Tue Nov 16 00:00:00 GMT 2010
dauer exit daf-2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2854 Thu Feb 18 00:00:00 GMT 2010 Tue Nov 16 00:00:00 GMT 2010
early embryo 20dC 0-4hrs post-fertilization N2 tiling array 476 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
early embryo N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2855 Thu Feb 18 00:00:00 GMT 2010 Tue Nov 16 00:00:00 GMT 2010
embryo A-class motor neurons tiling array 654 Wed Nov 18 00:00:00 GMT 2009 Fri Jun 25 01:00:00 BST 2010
embryo AVA neurons tiling array 459 Wed Nov 18 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
embryo GABA motor neurons tiling array 468 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
embryo all cells reference tiling array 456 Wed Nov 18 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
embryo body wall muscle tiling array (v2) 470 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
embryo coelomocytes tiling array 458 Wed Nov 18 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
embryo dopaminergic neurons tiling array 467 Thu Nov 19 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
embryo germline precursor cells tiling array 661 Thu Nov 19 00:00:00 GMT 2009 Fri Jun 25 01:00:00 BST 2010
embryo him-8 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2856 Thu Feb 18 00:00:00 GMT 2010 Tue Nov 16 00:00:00 GMT 2010
embryo hypodermal cells tiling array 662 Thu Nov 19 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
embryo intestine tiling array 457 Wed Nov 18 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
embryo panneural tiling array 455 Wed Nov 18 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
embryo_BAG_neurons_tiling_array 2499 Wed Feb 10 00:00:00 GMT 2010 Mon Nov 08 00:00:00 GMT 2010
embryo_PVC_neurons_tiling_array 2500 Tue Feb 16 00:00:00 GMT 2010 Mon Nov 08 00:00:00 GMT 2010
embryo_pharyngeal_muscle_tiling_array 2548 Wed Feb 10 00:00:00 GMT 2010 Mon Nov 08 00:00:00 GMT 2010
gonad from young adult 20dC 42hrs post-L1 N2 tiling array 481 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
late embryo 20dC 6-12hrs post-fertilization N2 tiling array 479 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
late embryo N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs 2857 Thu Feb 18 00:00:00 GMT 2010 Tue Nov 16 00:00:00 GMT 2010
male L4 25dC 36hrs post-L1 CB4689 tiling array 478 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
mid-L1_miRNA_expression_change 2777 Sat Feb 13 00:00:00 GMT 2010 Sat Nov 13 00:00:00 GMT 2010
pathogen Efaecalis 25dC 24hr exposure post-adulthood N2 tiling array 487 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
pathogen Pluminscens 25dC 24hr exposure post-adulthood N2 tiling array 486 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
pathogen Smarcescens 25dC 24hr exposure post-adulthood N2 tiling array 489 Tue Nov 17 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
pathogen Smarcescens 25dC 48hr exposure post-adulthood N2 tiling array 488 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
pathogen control OP50 25dC 24hr exposure post-adulthood N2 tiling array 491 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
pathogen control OP50 25dC 48hr exposure post-adulthood N2 tiling array 490 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010
small RNA 454 sequencing of N2 young adults 2831 Fri Feb 12 00:00:00 GMT 2010 Tue Nov 02 00:00:00 GMT 2010 Fabio Piano
small RNA 454 sequencing of eri-1(mg366) 2827 Fri Feb 12 00:00:00 GMT 2010 Tue Nov 02 00:00:00 GMT 2010 Fabio Piano
small RNA 454 sequencing of fer-1 unfertilized oocytes 2832 Fri Feb 12 00:00:00 GMT 2010 Tue Nov 02 00:00:00 GMT 2010 Fabio Piano
small RNA 454 sequencing of glp-4(bn2) 2828 Fri Feb 12 00:00:00 GMT 2010 Tue Nov 02 00:00:00 GMT 2010 Fabio Piano
small RNA 454 sequencing of him-8 sperm 2829 Fri Feb 12 00:00:00 GMT 2010 Tue Nov 02 00:00:00 GMT 2010 Fabio Piano
small RNA Illumina sequencing of N2 embryos 2826 Sun Feb 14 00:00:00 GMT 2010 Tue Nov 02 00:00:00 GMT 2010 Fabio Piano
small RNA Illumina sequencing of N2 whole worms 2825 Fri Feb 12 00:00:00 GMT 2010 Tue Nov 02 00:00:00 GMT 2010 Fabio Piano
small RNA Illumina sequencing of eri-1(mg366) 2821 Fri Feb 12 00:00:00 GMT 2010 Thu Nov 11 00:00:00 GMT 2010 Fabio Piano
small RNA Illumina sequencing of fer-1 unfertilized oocytes 2830 Sun Feb 14 00:00:00 GMT 2010 Tue Nov 02 00:00:00 GMT 2010 Fabio Piano
small RNA Illumina sequencing of glp-4(bn2) 2822 Fri Feb 12 00:00:00 GMT 2010 Thu Nov 11 00:00:00 GMT 2010 Fabio Piano
small RNA Illumina sequencing of him-8 sperm 2823 Sun Feb 14 00:00:00 GMT 2010 Thu Nov 11 00:00:00 GMT 2010 Fabio Piano
small RNA N2 embryos RNA-seq 634 Wed Nov 18 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
small RNA N2 mid-L1 RNA-seq 635 Wed Nov 18 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
small RNA N2 mid-L2 RNA-seq 636 Wed Nov 18 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
small RNA N2 mid-L3 RNA-seq 637 Wed Nov 18 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
small RNA N2 mid-L4 RNA-seq 638 Wed Nov 18 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
small RNA N2 young adult RNA-seq 639 Wed Nov 18 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
small RNA him-8 males RNA-seq 640 Wed Nov 18 00:00:00 GMT 2009 Mon Mar 15 00:00:00 GMT 2010
small RNAs from living one cell C. elegans embryos (GSM427345) 2489 Wed Nov 18 00:00:00 GMT 2009 Tue Aug 17 01:00:00 BST 2010
smallRNA from mixed-stage embryos (GSM427346) 2483 Tue Nov 17 00:00:00 GMT 2009 Mon Aug 16 01:00:00 BST 2010
smallRNAs from older, fixed C. elegans embryos (GSM427344) 2488 Wed Nov 18 00:00:00 GMT 2009 Tue Aug 17 01:00:00 BST 2010
smallRNAs from one cell stage C. elegans embryos (GSM427301) 2486 Wed Nov 18 00:00:00 GMT 2009 Tue Aug 17 01:00:00 BST 2010
smallRNAs from post-gastrulation C. elegans embryos (GSM427332) 2487 Wed Nov 18 00:00:00 GMT 2009 Tue Aug 17 01:00:00 BST 2010
smallRNAs from two-to-four cell C. elegans embryos (GSM427297) 2485 Wed Nov 18 00:00:00 GMT 2009 Tue Aug 17 01:00:00 BST 2010
soma-only mid-L4 25dC 36hrs post-L1 JK1107 tiling array 485 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010 Valerie Reinke
young adult 25dC 42hrs post-L1 N2 tiling array 475 Tue Nov 17 00:00:00 GMT 2009 Wed Jun 23 01:00:00 BST 2010 Valerie Reinke


We Need to generate an ?Analysis object for each experiment:

See ModENCODE Analysis & metadata discussion