Migration

From WormBaseWiki
Revision as of 18:06, 13 July 2009 by Tharris (talk | contribs) (New page: <nowiki> .: total 148 drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 atlas -rwxrwxr-x 1 todd wormbase 2486 Jul 6 14:06 autocompleter2 drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:06 cell...)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

.: total 148 drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 atlas -rwxrwxr-x 1 todd wormbase 2486 Jul 6 14:06 autocompleter2 drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:06 cell drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 curate drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 28937 Jul 6 14:06 das drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 entry drwxrwsr-x 4 todd wormbase 4096 Jul 13 13:14 gene drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 generic -rwxrwxr-x 1 todd wormbase 1790 Jul 6 14:06 get drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 gmod drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 hunter -rwxrwxr-x 1 todd wormbase 1555 Jul 6 14:06 id drwxrwsr-x 8 todd wormbase 4096 Jul 9 12:33 lib drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 mapview drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 microarray drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 misc drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 motif drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:06 ontology drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 orthology drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 private -rwxrwxr-x 1 todd wormbase 1034 Jul 6 14:06 rss drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:06 searches drwxrwsr-x 4 todd wormbase 4096 Jul 13 12:41 seq drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 SiteDefs drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 SR_expression -rw-rw-r-- 1 todd wormbase 1639 Jul 6 14:06 style.xml drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 surveys drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 sw drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 util ./atlas: total 16 -rwxrwxr-x 1 todd wormbase 4549 Jul 6 14:06 browse drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 2627 Jul 6 14:06 xy ./atlas/CVS: total 12 -rw-rw-r-- 1 todd wormbase 76 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 29 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./cell: total 408 -rwxrwxr-x 1 todd wormbase 20053 Jul 6 14:06 cell.cgi -rwxrwxr-x 1 todd wormbase 20272 Jul 6 14:06 cell.cgi.~1.49.~ drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 3916 Jul 6 14:06 make_pedigree.cgi -rwxrwxr-x 1 todd wormbase 253 Jul 6 14:06 mindofworm -rwxrwxr-x 1 todd wormbase 303783 Jul 6 14:06 neato drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:06 neuron -rwxrwxr-x 1 todd wormbase 4042 Jul 6 14:06 neuron.cgi -rw-rw-r-- 1 todd wormbase 10451 Jul 6 14:06 no_pedigree.gif -rwxrwxr-x 1 todd wormbase 17225 Jul 6 14:06 no_pedigree.png -rw-rw-r-- 1 todd wormbase 1674 Jul 6 14:06 pedigree.gif -rw-rw-r-- 1 todd wormbase 1318 Jul 6 14:06 Pedigree.pm -rwxrwxr-x 1 todd wormbase 1527 Jul 6 14:06 pedigree.png ./cell/CVS: total 12 -rw-rw-r-- 1 todd wormbase 459 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 28 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./cell/neuron: total 336 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 1876 Jul 6 14:06 dot2png.cgi drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 img -rwxrwxr-x 1 todd wormbase 303783 Jul 6 14:06 neato -rwxrwxr-x 1 todd wormbase 3726 Jul 6 14:06 neuron.cgi -rwxrwxr-x 1 todd wormbase 3419 Jul 6 14:06 neuron_png.pl -rw-rw-r-- 1 todd wormbase 7357 Jul 6 14:06 n.png -rwxrwxr-x 1 todd wormbase 2108 Jul 6 14:06 plain2png.pl ./cell/neuron/CVS: total 12 -rw-rw-r-- 1 todd wormbase 264 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 35 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./cell/neuron/img: total 4 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS ./cell/neuron/img/CVS: total 12 -rw-rw-r-- 1 todd wormbase 2 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 39 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./curate: total 28 -rwxrwxr-x 1 todd wormbase 6812 Jul 6 14:07 base drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:07 CVS -rwxrwxr-x 1 todd wormbase 3865 Jul 6 14:07 online_forms -rwxrwxr-x 1 todd wormbase 8474 Jul 6 14:07 submit ./curate/CVS: total 12 -rw-rw-r-- 1 todd wormbase 124 Jul 6 14:07 Entries -rw-rw-r-- 1 todd wormbase 30 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./CVS: total 12 -rw-rw-r-- 1 todd wormbase 535 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 23 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./entry: total 20 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 16101 Jul 6 14:06 edit_gene ./entry/CVS: total 12 -rw-rw-r-- 1 todd wormbase 44 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 29 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./gene: total 932 -rwxrwxr-x 1 todd wormbase 50302 Jul 6 14:07 allele -rwxrwxr-x 1 todd wormbase 4767 Jul 6 14:07 antibody drwxrwsr-x 2 todd wormbase 4096 Jul 10 11:08 CVS -rwxrwxr-x 1 todd wormbase 22832 Jul 6 14:07 expression -rw-rw-r-- 1 todd wormbase 2357 Jul 6 14:07 expr_map.gif -rw-rw-r-- 1 todd wormbase 2406 Jul 6 14:07 expr_map.png -rw-rw-r-- 1 todd wormbase 5689 Jul 6 14:07 expr_map_small.gif -rw-rw-r-- 1 todd wormbase 629 Jul 6 14:07 expr_map_small.png -rwxrwxr-x 1 todd wormbase 6467 Jul 6 14:07 expr_profile -rwxrwxr-x 1 todd wormbase 140250 Jul 13 13:14 gene -rwxrwxr-x 1 todd wormbase 138262 Jul 10 11:07 gene.~1.503.~ -rwxrwxr-x 1 todd wormbase 4397 Jul 6 14:07 geneapplet -rwxrwxr-x 1 todd wormbase 7058 Jul 6 14:07 gene_class -rwxrwxr-x 1 todd wormbase 1682 Jul 6 14:07 gene_in_profile -rwxrwxr-x 1 todd wormbase 138332 Jul 11 13:37 gene.old -rwxrwxr-x 1 todd wormbase 4466 Jul 6 14:07 genetable -rwxrwxr-x 1 todd wormbase 14333 Jul 6 14:07 gmap -rwxrwxr-x 1 todd wormbase 8019 Jul 6 14:07 homology_group -rwxrwxr-x 1 todd wormbase 23764 Jul 6 14:07 interaction -rwxrwxr-x 1 todd wormbase 2305 Jul 6 14:07 interaction_details -rwxrwxr-x 1 todd wormbase 11293 Jul 6 14:07 locus -rwxrwxr-x 1 todd wormbase 4477 Jul 6 14:07 mapping_data -rwxrwxr-x 1 todd wormbase 3353 Jul 6 14:07 motif -rw-rw-r-- 1 todd wormbase 23335 Jul 6 14:07 mountains_coords.txt -rwxrwxr-x 1 todd wormbase 3088 Jul 6 14:07 operon -rwxrwxr-x 1 todd wormbase 29456 Jul 6 14:07 rearrange -rwxrwxr-x 1 todd wormbase 5440 Jul 6 14:07 regulation drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 sk_map -rwxrwxr-x 1 todd wormbase 12043 Jul 6 14:07 strain -rwxrwxr-x 1 todd wormbase 5348 Jul 6 14:07 structure_data -rwxrwxr-x 1 todd wormbase 5308 Jul 6 14:07 transgene -rwxrwxr-x 1 todd wormbase 6108 Jul 6 14:07 transgene_tbls -rwxrwxr-x 1 todd wormbase 92220 Jul 6 14:07 variation -rwxrwxr-x 1 todd wormbase 77631 Jul 6 14:07 variation.~1.75.~ ./gene/CVS: total 12 -rw-rw-r-- 1 todd wormbase 1300 Jul 10 11:08 Entries -rw-rw-r-- 1 todd wormbase 28 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./gene/sk_map: total 4 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:07 CVS ./gene/sk_map/CVS: total 12 -rw-rw-r-- 1 todd wormbase 2 Jul 6 14:07 Entries -rw-rw-r-- 1 todd wormbase 35 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./generic: total 16 -rwxrwxr-x 1 todd wormbase 1237 Jul 6 14:06 acetable drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rw-rw-r-- 1 todd wormbase 1380 Jul 6 14:06 report -rwxrwxr-x 1 todd wormbase 3945 Jul 6 14:06 tree ./generic/CVS: total 12 -rw-rw-r-- 1 todd wormbase 119 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 31 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./gmod: total 4 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS ./gmod/CVS: total 12 -rw-rw-r-- 1 todd wormbase 2 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 28 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./hunter: total 108 -rw-rw-r-- 1 todd wormbase 46137 Jul 6 14:07 chromosome.gif -rw-rw-r-- 1 todd wormbase 961 Jul 6 14:07 chromosome.png drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:07 CVS -rwxrwxr-x 1 todd wormbase 44020 Jul 6 14:07 hunter.cgi -rwxrwxr-x 1 todd wormbase 6075 Jul 6 14:07 make_pic.cgi ./hunter/CVS: total 12 -rw-rw-r-- 1 todd wormbase 184 Jul 6 14:07 Entries -rw-rw-r-- 1 todd wormbase 30 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./lib: total 528 drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 CGI drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:07 CSS -rwxrwxr-x 1 todd wormbase 6580 Jul 6 14:06 CSS.pm drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS -rw-rw-r-- 1 todd wormbase 1337 Jul 6 14:06 develSubs.pm -rw-rw-r-- 1 todd wormbase 1314 Jul 6 14:06 ElegansOligos.pm -rw-rw-r-- 1 todd wormbase 130862 Jul 9 12:33 ElegansSubs.pm -rw-rw-r-- 1 todd wormbase 125723 Jul 6 14:06 ElegansSubs.pm.~1.433.~ -rw-rw-r-- 1 todd wormbase 120148 Jul 6 14:07 ElegansSubs.pm.bak -rw-rw-r-- 1 todd wormbase 38711 Jul 6 14:06 GBsyn.pm -rw-rw-r-- 1 todd wormbase 5780 Jul 6 14:06 MerlynAO.pm -rw-rw-r-- 1 todd wormbase 3742 Jul 6 14:06 MerlynGO.pm -rwxrwxr-x 1 todd wormbase 612 Jul 1 13:02 OntologySubs.pl -rwxrwxr-x 1 todd wormbase 172 Jul 6 14:06 OrthologySubs.pm -rw-rw-r-- 1 todd wormbase 7651 Jul 6 14:06 pICalculator.pm drwxrwsr-x 5 todd wormbase 4096 Jul 9 12:33 RSS -rw-rw-r-- 1 todd wormbase 8658 Jul 6 14:06 Seqview.pm drwxrwsr-x 5 todd wormbase 4096 Jul 6 14:06 SKMAP -rw-rw-r-- 1 todd wormbase 5069 Jul 6 14:07 Splicer.pm -rw-rw-r-- 1 todd wormbase 6891 Jul 6 14:06 StandardURLDumpers.pm -rw-rw-r-- 1 todd wormbase 1283 Jul 6 14:06 Util.pm drwxrwsr-x 4 todd wormbase 4096 Jul 9 12:33 WormBase -rw-rw-r-- 1 todd wormbase 395 Jul 6 14:06 WormBase.pm ./lib/CGI: total 16 drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS -rw-rw-r-- 1 todd wormbase 10197 Jul 6 14:06 Explorer.pm ./lib/CGI/CVS: total 12 -rw-rw-r-- 1 todd wormbase 46 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 31 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./lib/CSS: total 20 drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 Adaptor -rw-rw-r-- 1 todd wormbase 223 Jul 6 14:07 Adaptor.pm drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS -rw-rw-r-- 1 todd wormbase 4569 Jul 6 14:07 Selector.pm ./lib/CSS/Adaptor: total 12 -rw-rw-r-- 1 todd wormbase 503 Jul 6 14:07 AceGraphics.pm drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS -rw-rw-r-- 1 todd wormbase 191 Jul 6 14:07 default.pm ./lib/CSS/Adaptor/CVS: total 12 -rw-rw-r-- 1 todd wormbase 92 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 39 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./lib/CSS/CVS: total 12 -rw-rw-r-- 1 todd wormbase 101 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 31 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./lib/CVS: total 12 -rw-rw-r-- 1 todd wormbase 739 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 27 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./lib/RSS: total 60 drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS drwxrwsr-x 4 todd wormbase 4096 Jul 6 14:07 DB -rw-rw-r-- 1 todd wormbase 14687 Jul 9 12:33 ObjectHistory.pm -rw-rw-r-- 1 todd wormbase 14566 Jul 6 14:07 ObjectHistory.pm.~1.13.~ -rwxrwxr-x 1 todd wormbase 1475 Jul 6 14:07 populate_database.pl -rw-rw-r-- 1 todd wormbase 3885 Jul 6 14:07 README drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 sql -rwxrwxr-x 1 todd wormbase 185 Jul 6 14:07 test.pl -rwxrwxr-x 1 todd wormbase 1192 Jul 6 14:07 update_static_feeds.pl ./lib/RSS/CVS: total 12 -rw-rw-r-- 1 todd wormbase 256 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 31 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./lib/RSS/DB: total 12 drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:07 History -rw-rw-r-- 1 todd wormbase 125 Jul 6 14:07 History.pm ./lib/RSS/DB/CVS: total 12 -rw-rw-r-- 1 todd wormbase 57 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 34 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./lib/RSS/DB/History: total 12 drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS -rw-rw-r-- 1 todd wormbase 403 Jul 6 14:07 History.pm -rw-rw-r-- 1 todd wormbase 476 Jul 6 14:07 Objects.pm ./lib/RSS/DB/History/CVS: total 12 -rw-rw-r-- 1 todd wormbase 88 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 42 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./lib/RSS/sql: total 8 -rw-rw-r-- 1 todd wormbase 1024 Jul 6 14:07 create_schema.sql drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS ./lib/RSS/sql/CVS: total 12 -rw-rw-r-- 1 todd wormbase 52 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 35 Jul 6 14:07 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:07 Root ./lib/SKMAP: total 24 -rw-rw-r-- 1 todd wormbase 2657 Jul 6 14:06 Config.pm -rw-rw-r-- 1 todd wormbase 1270 Jul 6 14:06 Coordinates.pm drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Data drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Image -rwxrwxr-x 1 todd wormbase 1472 Jul 6 14:06 Search.pm ./lib/SKMAP/CVS: total 12 -rw-rw-r-- 1 todd wormbase 154 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 33 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./lib/SKMAP/Data: total 4 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS ./lib/SKMAP/Data/CVS: total 12 -rw-rw-r-- 1 todd wormbase 2 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 38 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./lib/SKMAP/Image: total 8 drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS -rw-rw-r-- 1 todd wormbase 2537 Jul 6 14:06 Figures.pm ./lib/SKMAP/Image/CVS: total 12 -rw-rw-r-- 1 todd wormbase 45 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 39 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./lib/WormBase: total 104 -rw-rw-r-- 1 todd wormbase 10048 Jul 6 14:06 AutocompleteLoad.pm -rw-rw-r-- 1 todd wormbase 13389 Jul 9 12:33 Autocomplete.pm drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS -rw-rw-r-- 1 todd wormbase 16606 Jul 6 14:06 FetchData.pm -rw-rw-r-- 1 todd wormbase 6073 Jul 6 14:06 Formatting.pm -rw-rw-r-- 1 todd wormbase 5329 Jul 6 14:06 GMapView.pm -rw-rw-r-- 1 todd wormbase 12659 Jul 9 12:33 Table.pm -rw-rw-r-- 1 todd wormbase 9358 Jul 6 14:06 Toggle.pm drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 Util -rw-rw-r-- 1 todd wormbase 1293 Jul 6 14:06 Util.pm ./lib/WormBase/CVS: total 12 -rw-rw-r-- 1 todd wormbase 372 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 36 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./lib/WormBase/Util: total 8 drwxrwsr-x 2 todd wormbase 4096 Jul 9 12:33 CVS -rw-rw-r-- 1 todd wormbase 1304 Jul 6 14:06 Rearrange.pm ./lib/WormBase/Util/CVS: total 12 -rw-rw-r-- 1 todd wormbase 47 Jul 9 12:33 Entries -rw-rw-r-- 1 todd wormbase 41 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./mapview: total 16 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 2668 Jul 6 14:06 dasdraw2 -rwxrwxr-x 1 todd wormbase 2467 Jul 6 14:06 geneticmap -rwxrwxr-x 1 todd wormbase 3360 Jul 6 14:06 sequenceapplet ./mapview/CVS: total 12 -rw-rw-r-- 1 todd wormbase 134 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 31 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./microarray: total 68 -rwxrwxr-x 1 todd wormbase 2671 Jul 6 14:06 cluster drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 13308 Jul 6 14:06 download -rwxrwxr-x 1 todd wormbase 3304 Jul 6 14:06 expression_cluster -rwxrwxr-x 1 todd wormbase 6600 Jul 6 14:06 microarray_aff -rwxrwxr-x 1 todd wormbase 1246 Jul 6 14:06 microarray_smd -rwxrwxr-x 1 todd wormbase 13412 Jul 6 14:06 results -rwxrwxr-x 1 todd wormbase 10833 Jul 6 14:06 search ./microarray/CVS: total 12 -rw-rw-r-- 1 todd wormbase 309 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 34 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./misc: total 336 -rwxrwxr-x 1 todd wormbase 14247 Jul 6 14:06 2005_survey -rwxrwxr-x 1 todd wormbase 840 Jul 6 14:06 acedb -rwxrwxr-x 1 todd wormbase 5528 Jul 6 14:06 author -rwxrwxr-x 1 todd wormbase 991 Jul 6 14:06 author_example -rwxrwxr-x 1 todd wormbase 8758 Jul 6 14:06 biblio -rwxrwxr-x 1 todd wormbase 5837 Jul 6 14:06 c2c drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 11056 Jul 6 14:06 database_stats -rwxrwxr-x 1 todd wormbase 5530 Jul 6 14:06 digest -rwxrwxr-x 1 todd wormbase 699 Jul 6 14:06 download_features -rwxrwxr-x 1 todd wormbase 728 Jul 6 14:06 download_sequence -rwxrwxr-x 1 todd wormbase 13963 Jul 6 14:06 epic -rwxrwxr-x 1 todd wormbase 5294 Jul 6 14:06 etree -rwxrwxr-x 1 todd wormbase 6215 Jul 6 14:06 feedback -rwxrwxr-x 1 todd wormbase 6353 Jul 6 14:06 format_datamining_example -rwxrwxr-x 1 todd wormbase 3004 Jul 6 14:06 gbrowse_popup -rwxrwxr-x 1 todd wormbase 3280 Jul 6 14:06 geo_map_by_paper -rwxrwxr-x 1 todd wormbase 9692 Jul 6 14:06 glossary -rwxrwxr-x 1 todd wormbase 1242 Jul 6 14:06 help -rwxrwxr-x 1 todd wormbase 3779 Jul 6 14:06 inline_feed -rwxrwxr-x 1 todd wormbase 6796 Jul 6 14:06 laboratory -rwxrwxr-x 1 todd wormbase 4731 Jul 6 14:06 life_stage -rwxrwxr-x 1 todd wormbase 1809 Jul 6 14:06 marc -rwxrwxr-x 1 todd wormbase 3402 Jul 6 14:06 model -rwxrwxr-x 1 todd wormbase 665 Jul 6 14:06 not_found -rwxrwxr-x 1 todd wormbase 11723 Jul 6 14:06 paper -rwxrwxr-x 1 todd wormbase 20521 Jul 6 14:06 person -rwxrwxr-x 1 todd wormbase 10560 Jul 6 14:06 person_name -rwxrwxr-x 1 todd wormbase 18882 Jul 6 14:06 phenotype -rwxrwxr-x 1 todd wormbase 701 Jul 6 14:06 random_pic -rwxrwxr-x 1 todd wormbase 188 Jul 6 14:06 redirect -rwxrwxr-x 1 todd wormbase 3394 Jul 6 14:06 release_stats -rwxrwxr-x 1 todd wormbase 2180 Jul 6 14:06 session -rwxrwxr-x 1 todd wormbase 38513 Jul 6 14:06 site_map -rwxrwxr-x 1 todd wormbase 5056 Jul 6 14:06 standard_urls -rwxrwxr-x 1 todd wormbase 7434 Jul 6 14:06 submit_feedback -rwxrwxr-x 1 todd wormbase 857 Jul 6 14:06 text -rwxrwxr-x 1 todd wormbase 3860 Jul 6 14:06 wb_people -rwxrwxr-x 1 todd wormbase 938 Jul 6 14:06 xml -rwxrwxr-x 1 todd wormbase 916 Jul 6 14:06 xml_md5 ./misc/CVS: total 12 -rw-rw-r-- 1 todd wormbase 1661 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 28 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./motif: total 4 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS ./motif/CVS: total 12 -rw-rw-r-- 1 todd wormbase 2 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 29 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./ontology: total 11536 -rwxrwxr-x 1 todd wormbase 35612 Jul 6 14:06 anatomy -rwxrwxr-x 1 todd wormbase 7734 Jul 6 14:06 anatomy_browser -rwxrwxr-x 1 todd wormbase 25040 Jul 6 14:06 browse -rwxrwxr-x 1 todd wormbase 4703 Jul 6 14:06 browser drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 browser_lib -rwxrwxr-x 1 todd wormbase 23926 Jul 6 14:06 browse_tree drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 24283 Jul 6 14:06 gene -rwxrwxr-x 1 todd wormbase 9034 Jul 6 14:06 go_dag -rwxrwxr-x 1 todd wormbase 7608 Jul 6 14:06 go_detail -rwxrwxr-x 1 todd wormbase 8812 Jul 6 14:06 goterm -rw-rw-r-- 1 todd wormbase 1330936 Jul 6 14:06 id2name.txt -rw-rw-r-- 1 todd wormbase 964896 Jul 6 14:06 id2parents.txt -rw-rw-r-- 1 todd wormbase 536044 Jul 6 14:06 parent2ids.txt -rwxrwxr-x 1 todd wormbase 17870 Jul 6 14:06 search -rw-rw-r-- 1 todd wormbase 8741690 Jul 6 14:06 search_data.txt -rwxrwxr-x 1 todd wormbase 11945 Jul 6 14:06 tree_lister ./ontology/browser_lib: total 40 -rwxrwxr-x 1 todd wormbase 2704 Jul 6 14:06 browser.initd drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 1029 Jul 6 14:06 launch_ontology_sockets.sh -rw-rw-r-- 1 todd wormbase 22464 Jul 6 14:06 OBrowse.pm -rw-rw-r-- 1 todd wormbase 765 Jul 6 14:06 README ./ontology/browser_lib/CVS: total 12 -rw-rw-r-- 1 todd wormbase 189 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 44 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./ontology/CVS: total 12 -rw-rw-r-- 1 todd wormbase 659 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 32 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./orthology: total 36 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 11398 Jul 6 14:06 disease -rwxrwxr-x 1 todd wormbase 10591 Jul 6 14:06 gene -rwxrwxr-x 1 todd wormbase 5841 Jul 6 14:06 search ./orthology/CVS: total 12 -rw-rw-r-- 1 todd wormbase 118 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 33 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./private: total 24 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 6514 Jul 6 14:06 manage_newsfeeds -rwxrwxr-x 1 todd wormbase 3288 Jul 6 14:06 test_urls -rwxrwxr-x 1 todd wormbase 5939 Jul 6 14:06 update_newsfeed ./private/CVS: total 12 -rw-rw-r-- 1 todd wormbase 141 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 31 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./searches: total 600 drwxrwsr-x 3 todd wormbase 4096 Jul 6 14:06 advanced -rwxrwxr-x 1 todd wormbase 7784 Jul 6 14:06 aql_query -rwxrwxr-x 1 todd wormbase 17902 Jul 6 14:06 basic -rwxrwxr-x 1 todd wormbase 55519 Jul 6 14:06 batch_genes -rwxrwxr-x 1 todd wormbase 20537 Jul 6 14:06 blast0212 -rwxrwxr-x 1 todd wormbase 47081 Jul 6 14:06 blast_blat -rwxrwxr-x 1 todd wormbase 9731 Jul 6 14:06 blast_ori -rwxrwxr-x 1 todd wormbase 154 Jul 6 14:06 blat -rwxrwxr-x 1 todd wormbase 2484 Jul 6 14:06 browser -rwxrwxr-x 1 todd wormbase 4222 Jul 6 14:06 class_query drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 11843 Jul 6 14:06 dasview -rwxrwxr-x 1 todd wormbase 4391 Jul 6 14:06 download_index -rwxrwxr-x 1 todd wormbase 13931 Jul 6 14:06 epcr -rwxrwxr-x 1 todd wormbase 95462 Jul 6 14:06 expr_search -rwxrwxr-x 1 todd wormbase 5457 Jul 6 14:06 fast_facts -rwxrwxr-x 1 todd wormbase 5437 Jul 6 14:06 gotable -rwxrwxr-x 1 todd wormbase 8860 Jul 6 14:06 graf.cgi -rwxrwxr-x 1 todd wormbase 13523 Jul 6 14:06 hunter.cgi -rwxrwxr-x 1 todd wormbase 35626 Jul 6 14:06 info_dump -rwxrwxr-x 1 todd wormbase 8016 Jul 6 14:06 interval -rwxrwxr-x 1 todd wormbase 18785 Jul 6 14:06 markers -rwxrwxr-x 1 todd wormbase 10634 Jul 6 14:06 multi -rwxrwxr-x 1 todd wormbase 4865 Jul 6 14:06 multi.search -rwxrwxr-x 1 todd wormbase 3830 Jul 6 14:06 neuron302.cgi -rwxrwxr-x 1 todd wormbase 28272 Jul 6 14:06 neuron_display -rwxrwxr-x 1 todd wormbase 5183 Jul 6 14:06 neuron_graf.cgi -rwxrwxr-x 1 todd wormbase 8858 Jul 6 14:06 pedigree -rwxrwxr-x 1 todd wormbase 6165 Jul 6 14:06 query -rwxrwxr-x 1 todd wormbase 15846 Jul 6 14:06 rnai_search -rwxrwxr-x 1 todd wormbase 4415 Jul 6 14:06 search_index -rwxrwxr-x 1 todd wormbase 1697 Jul 6 14:06 standard_urls -rwxrwxr-x 1 todd wormbase 36155 Jul 6 14:06 strains -rwxrwxr-x 1 todd wormbase 2358 Jul 6 14:06 text -rwxrwxr-x 1 todd wormbase 1926 Jul 6 14:06 text302 -rwxrwxr-x 1 todd wormbase 6349 Jul 6 14:06 wb_query ./searches/advanced: total 60 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 43224 Jul 6 14:06 dumper -rwxrwxr-x 1 todd wormbase 4289 Jul 6 14:06 dumper.cfg -rw-rw-r-- 1 todd wormbase 2268 Jul 6 14:06 dumper.methods.txt ./searches/advanced/CVS: total 12 -rw-rw-r-- 1 todd wormbase 136 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 41 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./searches/CVS: total 12 -rw-rw-r-- 1 todd wormbase 1475 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 32 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./seq: total 680 -rwxrwxr-x 1 todd wormbase 1009 Jul 6 14:06 align -rwxrwxr-x 1 todd wormbase 11448 Jul 6 14:06 aligner -rwxrwxr-x 1 todd wormbase 11644 Jul 6 14:06 clone drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxr-xr-x 1 root wormbase 34287 Jul 13 12:33 das -rwxrwxr-x 1 todd wormbase 2202 Jul 6 14:06 dasdraw -rwxrwxr-x 1 todd wormbase 2390 Jul 6 14:06 dna -rwxrwxr-x 1 todd wormbase 4985 Jul 6 14:06 do_align -rwxrwxr-x 1 todd wormbase 24840 Jul 6 14:06 ebsyn -rwxrwxr-x 1 todd wormbase 15999 Jul 6 14:06 frend drwxr-sr-x 2 todd wormbase 4096 Jul 10 10:00 gb2 -rwxr-xr-x 1 root wormbase 9258 Jul 13 12:33 gbgff -rwxr-xr-x 1 todd wormbase 125302 Jul 13 12:41 gbrowse -rwxr-xr-x 1 todd wormbase 15843 Jul 13 12:33 gbrowse_details -rwxr-xr-x 1 todd wormbase 4654 Jul 13 12:33 gbrowse_est -rwxr-xr-x 1 todd wormbase 35795 Jul 13 12:33 gbrowse_img -rwxr-xr-x 1 todd wormbase 50095 Jul 13 12:33 gbrowse_moby -rwxr-xr-x 1 todd wormbase 50059 Jul 13 12:33 gbrowse_syn -rwxrwxr-x 1 todd wormbase 4292 Jul 6 14:06 interaction -rwxrwxr-x 1 todd wormbase 3571 Jul 6 14:06 interaction_viewer -rwxr-xr-x 1 root wormbase 993 Jul 13 12:33 moby_server -rwxrwxr-x 1 todd wormbase 7636 Jul 6 14:06 pcr -rwxrwxr-x 1 todd wormbase 7634 Jul 6 14:06 position_matrix -rwxrwxr-x 1 todd wormbase 4047 Jul 6 14:06 promoter -rwxrwxr-x 1 todd wormbase 34886 Jul 6 14:06 protein -r--r--r-- 1 todd wormbase 701 Jul 10 09:34 README -rwxrwxr-x 1 todd wormbase 17613 Jul 6 14:06 rnai -rwxrwxr-x 1 todd wormbase 8614 Jul 6 14:06 sage -rwxrwxr-x 1 todd wormbase 45150 Jul 6 14:06 sequence -rwxrwxr-x 1 todd wormbase 13506 Jul 6 14:06 show_mult_align -rwxrwxr-x 1 todd wormbase 24250 Jul 6 14:06 transcript -rwxrwxr-x 1 todd wormbase 24282 Jul 6 14:06 tr_script -rwxr-xr-x 1 root wormbase 4166 Jul 13 12:33 tutorial_test.pl -rwxrwxr-x 1 todd wormbase 3256 Jul 6 14:06 wtp -rwxrwxr-x 1 todd wormbase 2405 Jul 6 14:06 y2h ./seq/CVS: total 12 -rw-rw-r-- 1 todd wormbase 1036 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 27 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./seq/gb2: total 76 -r--r--r-- 1 todd wormbase 1119 Jul 10 09:34 gbgff -r-xr-xr-x 1 todd wormbase 671 Jul 10 09:34 gbrowse -r-xr-xr-x 1 todd wormbase 18077 Jul 10 09:34 gbrowse_details -r-xr-xr-x 1 todd wormbase 21468 Jul 10 09:34 gbrowse_gmap -r-xr-xr-x 1 todd wormbase 20962 Jul 10 09:34 gbrowse_img ./SiteDefs: total 4 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS ./SiteDefs/CVS: total 12 -rw-rw-r-- 1 todd wormbase 2 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 32 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./SR_expression: total 80 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 10605 Jul 6 14:06 SRcell.pl -rwxrwxr-x 1 todd wormbase 21958 Jul 6 14:06 SR_expression.pl -rwxrwxr-x 1 todd wormbase 11220 Jul 6 14:06 SRsearch.pl -rwxrwxr-x 1 todd wormbase 26697 Jul 6 14:06 SRsubmit.pl ./SR_expression/CVS: total 12 -rw-rw-r-- 1 todd wormbase 182 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 37 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./surveys: total 84 -rwxrwxr-x 1 todd wormbase 14247 Jul 6 14:06 2005_wormbase -rwxrwxr-x 1 todd wormbase 13122 Jul 6 14:06 2006_topics_meetings -rwxrwxr-x 1 todd wormbase 27239 Jul 6 14:06 2007_wormbase -rwxrwxr-x 1 todd wormbase 16724 Jul 6 14:06 2007_wormbook drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS ./surveys/CVS: total 12 -rw-rw-r-- 1 todd wormbase 193 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 31 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./sw: total 12 -rwxrwxr-x 1 todd wormbase 4488 Jul 6 14:06 browse drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS ./sw/CVS: total 12 -rw-rw-r-- 1 todd wormbase 41 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 26 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root ./util: total 12 drwxrwsr-x 2 todd wormbase 4096 Jul 6 14:06 CVS -rwxrwxr-x 1 todd wormbase 1237 Jul 6 14:06 dump_version -rwxrwxr-x 1 todd wormbase 3122 Jul 6 14:06 wormbase.pm.defaults ./util/CVS: total 12 -rw-rw-r-- 1 todd wormbase 100 Jul 6 14:06 Entries -rw-rw-r-- 1 todd wormbase 28 Jul 6 14:06 Repository -rw-rw-r-- 1 todd wormbase 45 Jul 6 14:06 Root