Mf hmm tool
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Contents
Specifications/Instructions for the mf_hmm tool
Intended Use
The mf_hmm tool is to be used to categorize sentences with respect to whether they describe enzymatic or transporter activities. The results of the categorization will be used to continually train an HMM to identify sentences for curation from new papers.
Login page
The front page will be a curator login page. This will ensure that subsequent linking out from the form to the paper in the paper editor uses the appropriate curator ID.
List of papers page
The next page contains a list of all papers that potentially contain positive sentences. The papers are sorted according to relative rank (i.e., combined sentence score of the HMM for that paper).
Each paper listed on this page will have one of three curation status tags: Done, Not Done, Partial
The curation status tag is based upon the selection of values (more on this below) for each sentence in the paper:
Done = all sentences have either curated, TP, or FP flag.
Not Done = all sentences have blank flag.
Partial = a mix of curated, TP, FP, and blank.
Clicking on a paper link takes the curator to a page listing the sentences and curation options.
Curation page
The curation page lists all of the sentences from a given paper that had a score of 6 - 9 for the HMM.
TO BE CONTINUED.....
