Difference between revisions of "Mf hmm tool"
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The mf_hmm tool is to be used to categorize sentences with respect to whether they describe enzymatic or transporter activities. The results of the categorization will be used to continually train an HMM to identify sentences for curation from new papers. | The mf_hmm tool is to be used to categorize sentences with respect to whether they describe enzymatic or transporter activities. The results of the categorization will be used to continually train an HMM to identify sentences for curation from new papers. | ||
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| + | ===Login page=== | ||
1. Front page will be a curator login page. This will ensure that linking out to the paper in the paper editor uses the appropriate curator ID. | 1. Front page will be a curator login page. This will ensure that linking out to the paper in the paper editor uses the appropriate curator ID. | ||
Revision as of 22:19, 7 October 2010
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Specifications/Instructions for the mf_hmm tool
Intended Use
The mf_hmm tool is to be used to categorize sentences with respect to whether they describe enzymatic or transporter activities. The results of the categorization will be used to continually train an HMM to identify sentences for curation from new papers.
Login page
1. Front page will be a curator login page. This will ensure that linking out to the paper in the paper editor uses the appropriate curator ID.
2. Next page is a list of all papers potentially containing positive sentences. The papers are sorted according to relative rank (i.e., combined sentence score of HMM for that paper).
3. Each paper will have one of three curation status tags: Done, Not Done, Partial
Done = all sentences have either curated, TP, or FP flag.
Not Done = all sentences have blank flag.
Partial = a mix of curated, TP, FP, and blank.
4. Clicking on a paper link takes the curator to a page listing sentences and curation options.
