Difference between revisions of "Mapping the GAF to GO OA tables"
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Jump to navigationJump to search| Line 16: | Line 16: | ||
| Value after 'WB_ref:' prefix | | Value after 'WB_ref:' prefix | ||
| WBPaper00005654 | | WBPaper00005654 | ||
| − | | | + | | No |
|- | |- | ||
| gop_wbgene | | gop_wbgene | ||
| Line 22: | Line 22: | ||
| Exact string in Column 2 | | Exact string in Column 2 | ||
| WBGene00000829 | | WBGene00000829 | ||
| − | | | + | | No |
|- | |- | ||
| gop_project | | gop_project | ||
| No value in the GAF | | No value in the GAF | ||
| Will need to add another entry to the drop-down menu | | Will need to add another entry to the drop-down menu | ||
| − | | RNAi Phenotype2GO | + | | RNAi Phenotype2GO (only if Column 8 contains an RNAi experiment ID) |
| No | | No | ||
|- | |- | ||
| Line 36: | Line 36: | ||
| No | | No | ||
|- | |- | ||
| + | | gop_goontology | ||
| + | | Column 9: Aspect | ||
| + | | Exact string in Column 9 | ||
| + | | P | ||
| + | | No | ||
| + | |- | ||
| + | | gop_goid | ||
| + | | Column 5: GO ID | ||
| + | | Exact value in Column 5 | ||
| + | | GO:0007072 | ||
| + | | No | ||
| + | |- | ||
| + | | gop_goinference | ||
| + | | Column 7: Evidence Code | ||
| + | | Exact value in Column 7 | ||
| + | | IEA (all Phenotype2GO-based annotations will use IEA until we have a new ECO ID for these) | ||
| + | | No | ||
| + | |- | ||
| + | | gop_accession | ||
| + | | Column 8: With/From | ||
| + | | na | ||
| + | | na | ||
| + | | No | ||
| + | |- | ||
| + | | gop_with_wbgene | ||
| + | | Column 8: With/From | ||
| + | | na | ||
| + | | na | ||
| + | | No | ||
| + | |- | ||
| + | | gop_with_variation | ||
| + | | Column 8: With/From | ||
| + | | na | ||
| + | | na | ||
| + | | No | ||
| + | |- | ||
| + | | gop_with | ||
| + | | Column 8: With/From | ||
| + | | na | ||
| + | | na | ||
| + | | No | ||
| + | |- | ||
| + | | gop_with_RNAi | ||
| + | | Column 8: With/From | ||
| + | | Value after 'WB:' prefix that begins with string WBRNAi | ||
| + | | WBRNAi | ||
|} | |} | ||
Revision as of 21:45, 3 November 2014
Mapping the Phenotype2GO GAF to GO OA Tables
Back to Gene Ontology
| OA Table | GAF Column | Value for OA Table | Example Value | New OA Table? |
|---|---|---|---|---|
| gop_paper | Column 6 DB:Reference | Value after 'WB_ref:' prefix | WBPaper00005654 | No |
| gop_wbgene | Column 2: DB Object ID | Exact string in Column 2 | WBGene00000829 | No |
| gop_project | No value in the GAF | Will need to add another entry to the drop-down menu | RNAi Phenotype2GO (only if Column 8 contains an RNAi experiment ID) | No |
| gop_curator | No value in the GAF | n/a | n/a | No |
| gop_goontology | Column 9: Aspect | Exact string in Column 9 | P | No |
| gop_goid | Column 5: GO ID | Exact value in Column 5 | GO:0007072 | No |
| gop_goinference | Column 7: Evidence Code | Exact value in Column 7 | IEA (all Phenotype2GO-based annotations will use IEA until we have a new ECO ID for these) | No |
| gop_accession | Column 8: With/From | na | na | No |
| gop_with_wbgene | Column 8: With/From | na | na | No |
| gop_with_variation | Column 8: With/From | na | na | No |
| gop_with | Column 8: With/From | na | na | No |
| gop_with_RNAi | Column 8: With/From | Value after 'WB:' prefix that begins with string WBRNAi | WBRNAi |
