Difference between revisions of "Main Page Temp"

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This is the official wiki site for [http://www.wormbase.org WormBase], the database of the model organism [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans] and related nematodes. WormBase is developed by an [[WormBase Consortium|an international consortium]] of researchers and computer scientists.  
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This is the official wiki site for [http://www.wormbase.org WormBase], the database of the model organism [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans] and related nematodes.  
  
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To edit this Wiki, please create an account (click on the 'log in/create account' link at the top of the page). Before contributing, please see the [[Wiki objectives and usage guidelines|WormBaseWiki usage guidelines]].  
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WormBase is developed by an [http://www.wormbase.org/about/staff#01--10 international consortium] of researchers and computer scientists.  
  
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== Table of Contents ==
 
  
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*[[Species available through WormBase (overview)| Overview of all species]]
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To edit this Wiki, please create an account (click on the 'log in/create account' link at the top of the page). Before contributing, please see the [[Wiki objectives and usage guidelines|WormBaseWiki usage guidelines]].
  
  
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== Community Resources  ==
 
  
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*[http://www.wormbase.org/db/misc/laboratory?name=%2A;class=laboratory C. elegans laboratories]
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Please select which domain of the WormBase Wiki that you would like to browse:
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*[[Meetings|Meetings]]
 
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*[http://www.wormbase.org/forums/ Worm Community Discussion Forum] ([http://www.wormbase.org/forums/ Job postings])
 
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*[[Software for nematode research|Software for nematode research]]
 
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*[[Related web resources|Related web resources]]
 
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*[[NGASP|NGASP]]
 
  
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=== Reagents and Protocols ===
 
  
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*[[Strains|Strains]]
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=<font size=5>WormBase User Guide</font>=
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*[[Reagents|Reagents]] - ''Useful reagents from third-party sources''
 
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*[[Cosmids/YACs|Cosmids/YACs]]
 
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*[[Fosmids|Fosmids]]
 
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* Experimental protocols: [http://www.wormbook.org/toc_wormmethods.html WormMethods @ WormBook] | [http://www.wormbase.org/forums/ Worm Community Forum]
 
  
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=== Microarray Data ===
 
  
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*[http://smd.stanford.edu/search.shtml  Stanford Microarray Database (SMD) search page]
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* <font size=4>Biological Entities & Experimental Data</font>
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*[http://smd.stanford.edu/cgi-bin/search/nameSearch.pl SMD gene-centric search page]
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** [[WormBase Genomes]]
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*[http://smd.stanford.edu/cgi-bin/publication/viewPublication.pl?pub_no=91 Jiang et al. (2001), PNAS 98, 218-223] (SMD data from Kim laboratory's 2001 microarray paper)
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** [[Genes]]
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*[ftp://smd-ftp.stanford.edu/smd/publications/91/  SMD's FTP site]
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** Proteins
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*[[SPELL|''SPELL'']]
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** RNAs
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** Variations
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** Cells/Anatomy
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** Pseudogenes
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** Operons
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** Transposons
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** CDS
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** Chromosomes
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** Experiments
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** [[Microarray Data]]
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**[[Downloads|Downloads]] - ''Download commonly requested files and datasets''  
  
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== Using WormBase  ==
 
  
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*[[Site Map|Site Map]]  
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* <font size=4>Reagents & Protocols</font>
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*[[Mirror sites and frozen releases|Mirror sites and frozen releases]]
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** [[Strains]]
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** [[Reagents]]
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** [http://www.wormbook.org/toc_wormmethods.html WormMethods @ WormBook]
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** [http://www.wormbase.org/forums/ Worm Community Forum] -- see Methods, Protocols, Reagents
  
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User Guides
 
  
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*[[User Guide|Official User Guide]]  -- ''Usage, FAQs, Glossary of terms''
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* <font size=4>External Community Resources</font>
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*[[Data mining|Data mining]] - ''Learn about the methods for mining WormBase systematically''
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**[[Software for nematode research|Software for nematode research]]  
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*[[Searching WormBase for Information About C. elegans (Wiley)|Searching WormBase for Information About C. elegans (Wiley)]]  
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**[[Related web resources|Related web resources]]
  
  
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*[[Downloads|Downloads]] - ''Download commonly requested files and datasets''
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* <font size=4>WormBase Tools & Queries</font>
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*[[Guidelines for Users on Submitting/Reporting Data to WormBase|Submitting data and reporting errors]]
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**[[Data mining]]
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**[[Searching WormBase for Information About C. elegans (Wiley)|Searching WormBase for Information About C. elegans]]
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**[[User Guide|Official User Guide]] -- ''Usage, FAQs, Glossary of terms''
  
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General Information
 
  
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*[[Release Schedule|Release Schedule]] - ''When to expect the next release of WormBase, and information on past releases''
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* <font size=4>People/Community</font>
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*[[Citing WormBase|Citing WormBase]]
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** [[Meetings]]
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*[[Presentations|Presentations]] | [[Publications|Publications]] - ''public information presented by the developers of WormBase''
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** [http://www.wormbase.org/forums/ Worm Community Discussion Forum]
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*[[Local installation of WormBase|Installng WormBase on your own computer]]
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** [http://www.wormbase.org/forums/ Job postings]
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*[[Editorial policy|Editorial policy]] - ''WormBase editorial policy''
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**[[NGASP|NGASP]]
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*[[Acceptable use policy|Acceptable use policy]]
 
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*[[WormBaseWiki:Copyrights|Copyright statement]]  
 
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*[[Acceptable use policy#Privacy statement|Privacy statement]]
 
  
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== Staying up-to-date  ==
 
  
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[http://www.wormbase.org WormBase] offers a number of ways to stay up-to-date with new features and datasets, to make feature requests, and to ask for assistance with the database.
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* <font size=4>Data Submission/Correction</font>
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**[[Guidelines for Users on Submitting/Reporting Data to WormBase|Submitting data and reporting errors]]
  
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* Live Help Desk: [http://friendfeed.com/rooms/wormbase The WormBase Room on FriendFeed]
 
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* Twitter: [http://www.twitter.com/wormbase Status updates], [http://www.twitter.com/wormbase_commit Software commit messages]
 
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* Mailing Lists: [[Mailing lists#help|General questions]] | [[Mailing lists#developers|Developers]] -- [[Mailing lists|More...]]
 
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* RSS Feeds: [http://www.wormbase.org/rss/wormbase-live.xml News and Status] | [http://www.wormbase.org/rss/wormbase-dev.xml Development News] -- [[RSS news feeds|More Info]]
 
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*[[WormBase Newsletters|WormBase Newsletters]]
 
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*[http://www.wormbook.org/announce.html WormBook Announcements] - ''low volume''
 
  
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== Internal Documentation ==
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* <font size=4>Staying Up-to-Date with WormBase</font>
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**[http://www.wormbase.org WormBase] offers a number of ways to stay up-to-date with new features and datasets, to make feature requests, and to ask for assistance with the database.
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** Live Help Desk: [http://friendfeed.com/rooms/wormbase The WormBase Room on FriendFeed]
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** Twitter: [http://www.twitter.com/wormbase Status updates], [http://www.twitter.com/wormbase_commit Software commit messages]
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** Mailing Lists: [[Mailing lists#help|General questions]] | [[Mailing lists#developers|Developers]] -- [[Mailing lists|More...]]
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** RSS Feeds: [http://www.wormbase.org/rss/wormbase-live.xml News and Status] | [http://www.wormbase.org/rss/wormbase-dev.xml Development News] -- [[RSS news feeds|More Info]]
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**[[WormBase Newsletters|WormBase Newsletters]]
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**[http://www.wormbook.org/announce.html WormBook Announcements] - ''low volume''
  
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*[[Developer documentation|Developer documentation]]
 
  
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*[[Caltech documentation]]
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* <font size=4>[[Glossary of terms|WormBase Glossary]]</font>
  
  
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* <font size=4>General Information</font>
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**[[Release Schedule|Release Schedule]] - ''When to expect the next release of WormBase, and information on past releases''
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**[[Mirror sites and frozen releases|Mirror sites and frozen releases]]
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**[[Citing and Acknowledging WormBase|Citing and Acknowledging WormBase]]
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**[[Presentations]] | [[Publications]] - ''public information presented by the developers of WormBase''
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**[[Local installation of WormBase|Installng WormBase on your own computer]]
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**[[Editorial policy]] - ''WormBase editorial policy''
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**[[Acceptable use policy]]
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**[[WormBaseWiki:Copyrights]]
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**[[Acceptable use policy#Privacy statement|Privacy statement]]
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**[[Site Map|WormBase Wiki Site Map]]
  
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[[Category:User Guide]]
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[[Category:Developer documentation]]
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[[Category:WikiMainPage]]
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[[Category:Meetings]]
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=<font size=5> Internal Documentation </font>=
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[[Category:Curation]]
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*<font size=4>[[WormBase Staff Resources]]</font>
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*<font size=4>[[Developer documentation]]</font>
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*<font size=4>[[Caltech documentation]]</font>
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*<font size=4>[[Working Groups]]</font>

Latest revision as of 08:46, 8 October 2014

This is the official wiki site for WormBase, the database of the model organism Caenorhabditis elegans and related nematodes.

WormBase is developed by an international consortium of researchers and computer scientists.


To edit this Wiki, please create an account (click on the 'log in/create account' link at the top of the page). Before contributing, please see the WormBaseWiki usage guidelines.


Please select which domain of the WormBase Wiki that you would like to browse:


WormBase User Guide

  • Biological Entities & Experimental Data











Internal Documentation




Retrieved from "https://wiki.wormbase.org/index.php?title=Main_Page_Temp&oldid=25035"