Difference between revisions of "LEGO Curation"

From WormBaseWiki
Jump to navigationJump to search
Line 8: Line 8:
 
= LEGO at its Most Basic =
 
= LEGO at its Most Basic =
 
*Molecular functions are ''enabled_by'' genes/gene products
 
*Molecular functions are ''enabled_by'' genes/gene products
*Molecular functions are ''part_of'' biological processes
+
*Molecular functions may be ''part_of'' larger biological processes
 
*Molecular functions ''occur_in'' some location
 
*Molecular functions ''occur_in'' some location
 
**Subcellular locations are ''part_of'' some larger anatomical structure
 
**Subcellular locations are ''part_of'' some larger anatomical structure
 +
 +
= LEGO Beyond Basics =
 +
*Some biological processes serve to ''regulate'' other biological processes
 +
**The regulation may be 'positive' or 'negative'
 +
*Some biological processes are ''causally upstream of'' other biological processes

Revision as of 14:40, 23 January 2017

Agenda

Logins

  • Everyone set up okay?

LEGO Principles

  • Pieces of biological information are connected using a controlled vocabulary of relations
  • Assertions made using these relations are supported with evidence statements, i.e. ECO codes, references

LEGO at its Most Basic

  • Molecular functions are enabled_by genes/gene products
  • Molecular functions may be part_of larger biological processes
  • Molecular functions occur_in some location
    • Subcellular locations are part_of some larger anatomical structure

LEGO Beyond Basics

  • Some biological processes serve to regulate other biological processes
    • The regulation may be 'positive' or 'negative'
  • Some biological processes are causally upstream of other biological processes