January 12, 2010

Agenda

item 1 - Interaction Display

Multiple Effector/Effected

item 2 - Using the NEW Ontology Annotator for Interactions

Notes

item 1 - Interaction Display

Additional changes to the web display that we spoke about at our Interaction Working group meeting include: (see https://bitbucket.org/tharris/wormbase/issue/471/changes-to-interaction-displays-on-wb)

1. Showing all effector and effected genes on the Interaction summary page (currently only two shown)
   • see: http://dev.wormbase.org/db/gene/interaction?name=WBInteraction0051554
   • On this page one of the Effected genes is not displayed (lin-15B - WBGene00023497 = details in tree display)
2. Showing all effector and effected genes on the Interaction Summary page.
   • See http://dev.wormbase.org/db/gene/interaction?list=WBGene00007914
   • This list is from the interaction summary of mys-4 and the first on the list (WBInteraction0051554) corresponds to the example in 1 (see above).

on this list mys-4 remains in the interactor 1 column and lin-15B should be added to the interactor 2 column ....so it would read "lin-15A, lin-15B"....comma separated.

item 2 - Using the NEW Ontology Annotator for Interactions

1. We went over the use of the Interaction OA -
   • How to enter data through the cgi and how to parse in data from RNAi curation. We also went over the dump procedures. Information can be found at http://wiki.wormbase.org/index.php/Gene_Interaction