Difference between revisions of "January 12, 2010"
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Latest revision as of 22:52, 12 January 2011
Agenda
- item 1 - Interaction Display
-
- Multiple Effector/Effected
- item 2 - Using the NEW Ontology Annotator for Interactions
Notes
- item 1 - Interaction Display
Additional changes to the web display that we spoke about at our Interaction Working group meeting include: (see https://bitbucket.org/tharris/wormbase/issue/471/changes-to-interaction-displays-on-wb)
- Showing all effector and effected genes on the Interaction summary page (currently only two shown)
- see: http://dev.wormbase.org/db/gene/interaction?name=WBInteraction0051554
- On this page one of the Effected genes is not displayed (lin-15B - WBGene00023497 = details in tree display)
- Showing all effector and effected genes on the Interaction Summary page.
- See http://dev.wormbase.org/db/gene/interaction?list=WBGene00007914
- This list is from the interaction summary of mys-4 and the first on the list (WBInteraction0051554) corresponds to the example in 1 (see above).
- on this list mys-4 remains in the interactor 1 column and lin-15B should be added to the interactor 2 column ....so it would read "lin-15A, lin-15B"....comma separated.
- item 2 - Using the NEW Ontology Annotator for Interactions
- We went over the use of the Interaction OA -
- How to enter data through the cgi and how to parse in data from RNAi curation. We also went over the dump procedures. Information can be found at http://wiki.wormbase.org/index.php/Gene_Interaction
