Difference between revisions of "Issues-7/23/2013"

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== JB: Test suite expansion ==
 
== JB: Test suite expansion ==
 
* GBrowse tests
 
* GBrowse tests
 +
** goes through config - dl image for each track/species
 +
** need to benchmark - could be slow
 
* Jenkins
 
* Jenkins
** add emails?
+
** continuous integration - tests run whenever we push to staging
 +
** need to test api tests
 +
** add emails - yes
 +
 
 +
Write tests!
 +
[http://wiki.wormbase.org/index.php/Unit_Testing Unit Testing]
  
 
== JB: Outstanding GBrowse Issues ==
 
== JB: Outstanding GBrowse Issues ==
Line 18: Line 25:
 
  [https://github.com/WormBase/website/issues/1529 1529]
 
  [https://github.com/WormBase/website/issues/1529 1529]
  
* Standardize GBrowse config  [https://github.com/WormBase/website/issues/909 909]
 
** is there still work for this?
 
 
* Bug report: missing bp?  [https://github.com/WormBase/website/issues/1517 1517]  [https://github.com/WormBase/website/issues/1518 1518]
 
* Bug report: missing bp?  [https://github.com/WormBase/website/issues/1517 1517]  [https://github.com/WormBase/website/issues/1518 1518]
 +
** will look at this after testing
  
 
For 239:
 
For 239:
 
* Test GFF3 and update species still using Bio::DB::GFF to Bio::DB::SeqFeature::Store  [https://github.com/WormBase/website/issues/910 910]
 
* Test GFF3 and update species still using Bio::DB::GFF to Bio::DB::SeqFeature::Store  [https://github.com/WormBase/website/issues/910 910]
 +
* Standardize GBrowse config  [https://github.com/WormBase/website/issues/909 909]
 +
** is there still work for this? - FOR 239
  
 
== JD: July Issues ==
 
== JD: July Issues ==
Line 34: Line 42:
 
In progress:
 
In progress:
 
* Lineage browsing [https://github.com/WormBase/website/issues/741 741] - July 25
 
* Lineage browsing [https://github.com/WormBase/website/issues/741 741] - July 25
 +
** http://wiki.wormbase.org/index.php/Creating_a_tool
 +
 +
Cytoscape
 +
* upgrade to js version
  
 
= Triage new issues =
 
= Triage new issues =
* will update this! Just wait!
+
* Download widget URLs wrong [https://github.com/WormBase/website/issues/1586 1586] - JB
 +
* Transgene table reporter column wrong [https://github.com/WormBase/website/issues/1585 1585] - JB
 +
* 500 server error dl motifs [https://github.com/WormBase/website/issues/1583 1583] - JD
 +
* Disease page - genes_by_biology missing [https://github.com/WormBase/website/issues/1472 1472] - JD
 +
* wrong paper associations [https://github.com/WormBase/website/issues/1049 1049] -AC
 +
* save table bug [https://github.com/WormBase/website/issues/1484 1484] - JB
 +
* Bristol hard-coded [https://github.com/WormBase/website/issues/1308 1308] - AC
 +
* 500 error widget - molecular details [https://github.com/WormBase/website/issues/1272 1272] - JD
 +
 
 +
 
 +
Not urgent (but should be done before WS239):
 +
* Blast - e value sorting [https://github.com/WormBase/website/issues/1588 1588] - JB
 +
* Consecutive questions help tab [https://github.com/WormBase/website/issues/1582 1582] - AC
 +
* Feature request: Features connected to Transcripts [https://github.com/WormBase/website/issues/1567 1567] - JD
 +
* New table in associations widget - anatomy page [https://github.com/WormBase/website/issues/1549 1549] - AC
 +
* start not found/end not found for CDSes [https://github.com/WormBase/website/issues/1506 1506] - AC

Latest revision as of 18:10, 23 July 2013

All meetings: WebDev Issues Meetings

Tuesday July 16th, 10:30am 5th floor kitchen


Progress on tasks to resolve before WS239

JB: Test suite expansion

  • GBrowse tests
    • goes through config - dl image for each track/species
    • need to benchmark - could be slow
  • Jenkins
    • continuous integration - tests run whenever we push to staging
    • need to test api tests
    • add emails - yes

Write tests! Unit Testing

JB: Outstanding GBrowse Issues

  • 4 are 'Under testing'
1356
1410
1503
1529
  • Bug report: missing bp? 1517 1518
    • will look at this after testing

For 239:

  • Test GFF3 and update species still using Bio::DB::GFF to Bio::DB::SeqFeature::Store 910
  • Standardize GBrowse config 909
    • is there still work for this? - FOR 239

JD: July Issues

For review:

  • Process pages 337 - July 18
  • Wiki Pathway 1415 1525 - July 18
  • Predicted exon sturcture 942 - July 23

In progress:

Cytoscape

  • upgrade to js version

Triage new issues

  • Download widget URLs wrong 1586 - JB
  • Transgene table reporter column wrong 1585 - JB
  • 500 server error dl motifs 1583 - JD
  • Disease page - genes_by_biology missing 1472 - JD
  • wrong paper associations 1049 -AC
  • save table bug 1484 - JB
  • Bristol hard-coded 1308 - AC
  • 500 error widget - molecular details 1272 - JD


Not urgent (but should be done before WS239):

  • Blast - e value sorting 1588 - JB
  • Consecutive questions help tab 1582 - AC
  • Feature request: Features connected to Transcripts 1567 - JD
  • New table in associations widget - anatomy page 1549 - AC
  • start not found/end not found for CDSes 1506 - AC