Difference between revisions of "Issues-5/21/2013"
From WormBaseWiki
Jump to navigationJump to search (→Admin) |
|||
(9 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
All meetings: [[WebDev Issues Meetings]] | All meetings: [[WebDev Issues Meetings]] | ||
− | Tuesday | + | Tuesday MayBoardroom |
− | = | + | = Milest= |
{| | {| | ||
Line 22: | Line 22: | ||
| [https://github.com/WormBase/website/issues/assigned/joejimbo?direction=desc&labels=&milestone=10&sort=updated&state=open 3] | | [https://github.com/WormBase/website/issues/assigned/joejimbo?direction=desc&labels=&milestone=10&sort=updated&state=open 3] | ||
| [https://github.com/WormBase/website/issues/assigned/none?direction=desc&labels=&milestone=10&sort=updated&state=open 7] | | [https://github.com/WormBase/website/issues/assigned/none?direction=desc&labels=&milestone=10&sort=updated&state=open 7] | ||
− | | | + | | |
|} | |} | ||
= Update on Intermod meeting / Last week in general = | = Update on Intermod meeting / Last week in general = | ||
+ | Intermod meeting: | ||
+ | * Intermine 2.0 (alpha) | ||
+ | ** no jsps | ||
+ | ** restful api | ||
+ | ** embeddable | ||
+ | ** beta later this year | ||
+ | * Monarch group meeting on Thurs - no WB representative | ||
+ | ** bring data from various mods together | ||
+ | * QueryBuilder page - add graph view (brainstorming) | ||
+ | * Human mine discussed | ||
+ | * request: Ability to share and edit other ppls templates | ||
+ | ** template versioning | ||
+ | * correlating documentation - branding? | ||
+ | * user profiles - personas | ||
+ | |||
+ | Developer meeting: | ||
+ | * how we're running mines | ||
+ | * Jenkins - rebuilds mine when mine folder updated | ||
+ | |||
+ | Breakout | ||
+ | * didn't get to talk through much issues | ||
+ | |||
+ | Curations Issues - for Intermine | ||
+ | * getting curators more involved, making templates | ||
+ | * scheduled tutorials | ||
+ | |||
= Code review = | = Code review = | ||
Line 32: | Line 58: | ||
=== Joachim === | === Joachim === | ||
− | * [https://github.com/WormBase/website/issues/1034 | + | * [https://github.com/WormBase/website/issues/#1034 #1034] |
− | * [https://github.com/WormBase/website/issues/628 | + | ** Important - backend done. Front-end need to figure out |
− | * [https://github.com/WormBase/website/issues/155 | + | * [https://github.com/WormBase/website/issues/#628 #628] |
− | * [https://github.com/WormBase/website/issues/910 | + | ** not major - WS239 |
− | * [https://github.com/WormBase/website/issues/909 | + | * [https://github.com/WormBase/website/issues/#155 #155] |
− | * Production issue | + | ** gbrowse problems - reassign to lincoln |
+ | * [https://github.com/WormBase/website/issues/#910 #910] | ||
+ | ** received files, will finish for WS238 | ||
+ | * [https://github.com/WormBase/website/issues/#909 #909] | ||
+ | ** not major - WS239 | ||
+ | * Production issue: stability issues WS236, seeing "panic: fold_constants JMPENV_PUSH returnedwormbase/extlib/lib/perl5/Plack/Util.pm line 118." | ||
+ | ** need to improved logging | ||
=== JD === | === JD === | ||
* Intermine branding | * Intermine branding | ||
+ | ** header and footer working on | ||
+ | |||
+ | Intermine: | ||
+ | * linkouts configured to WormBase | ||
+ | # get mine up for IWM | ||
+ | # release pipeline | ||
+ | # extras | ||
+ | * accounts - link them | ||
* Cytoscape: | * Cytoscape: | ||
** update on Process page | ** update on Process page | ||
− | ** [https://github.com/WormBase/website/issues/ | + | ** [https://github.com/WormBase/website/issues/#741] |
*** Cell lineage browsing using Cytoscape - ready to start this? | *** Cell lineage browsing using Cytoscape - ready to start this? | ||
+ | * on hold till the IWM | ||
* Merge redundant columns in Curatorial history table | * Merge redundant columns in Curatorial history table | ||
− | ** [https://github.com/WormBase/website/issues/ | + | ** [https://github.com/WormBase/website/issues/#1141] |
* WormMine issues: | * WormMine issues: | ||
− | # | + | #"Genes" with a Primary Identifier that is not of the format "WBGene0000####" Intermine |
− | # | + | #: the cambridge logo in the footer is too prominent Intermine |
− | # | + | #: "Gene Name" under protein queries should be "Protein Name" Intermine |
− | # | + | #: add genus, species, and other name Intermine |
− | # | + | #yieldsheader for each row Intermine |
− | # | + | #on the gene report is non-informative Intermine |
− | # | + | #are missing their primary name Intermine |
− | # | + | #error message Intermine |
− | # | + | #using Cytoscape? feature request Webteam UI-data display |
− | + | #for WormMine Intermine | |
− | + | #message Intermine | |
− | + | #exporter Intermine | |
− | # | + | #functionality Intermine |
− | # | + | #WormMine use cases Intermine |
− | # | ||
− | # | ||
− | # | ||
= Triage new issues = | = Triage new issues = |
Latest revision as of 20:13, 21 May 2013
All meetings: WebDev Issues Meetings
Tuesday MayBoardroom
Contents
Milest
Release | total | tharris | acabunoc | jdmswong | joejimbo | unassigned | due |
---|---|---|---|---|---|---|---|
WS238 | 58 | 13 | 26 | 2 | 3 | 7 |
Update on Intermod meeting / Last week in general
Intermod meeting:
- Intermine 2.0 (alpha)
- no jsps
- restful api
- embeddable
- beta later this year
- Monarch group meeting on Thurs - no WB representative
- bring data from various mods together
- QueryBuilder page - add graph view (brainstorming)
- Human mine discussed
- request: Ability to share and edit other ppls templates
- template versioning
- correlating documentation - branding?
- user profiles - personas
Developer meeting:
- how we're running mines
- Jenkins - rebuilds mine when mine folder updated
Breakout
- didn't get to talk through much issues
Curations Issues - for Intermine
- getting curators more involved, making templates
- scheduled tutorials
Code review
Issues in progress
Joachim
- #1034
- Important - backend done. Front-end need to figure out
- #628
- not major - WS239
- #155
- gbrowse problems - reassign to lincoln
- #910
- received files, will finish for WS238
- #909
- not major - WS239
- Production issue: stability issues WS236, seeing "panic: fold_constants JMPENV_PUSH returnedwormbase/extlib/lib/perl5/Plack/Util.pm line 118."
- need to improved logging
JD
- Intermine branding
- header and footer working on
Intermine:
- linkouts configured to WormBase
- get mine up for IWM
- release pipeline
- extras
- accounts - link them
- Cytoscape:
- update on Process page
- [1]
- Cell lineage browsing using Cytoscape - ready to start this?
- on hold till the IWM
- Merge redundant columns in Curatorial history table
- WormMine issues:
- "Genes" with a Primary Identifier that is not of the format "WBGene0000####" Intermine
- the cambridge logo in the footer is too prominent Intermine
- "Gene Name" under protein queries should be "Protein Name" Intermine
- add genus, species, and other name Intermine
- yieldsheader for each row Intermine
- on the gene report is non-informative Intermine
- are missing their primary name Intermine
- error message Intermine
- using Cytoscape? feature request Webteam UI-data display
- for WormMine Intermine
- message Intermine
- exporter Intermine
- functionality Intermine
- WormMine use cases Intermine