Difference between revisions of "Issues-5/21/2013"

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All meetings: [[WebDev Issues Meetings]]
 
All meetings: [[WebDev Issues Meetings]]
  
Tuesday May 21th, 10:30am, 5th floor NW Boardroom
+
Tuesday MayBoardroom
  
= Admin =
+
= Milest=
  
 
{|
 
{|
Line 22: Line 22:
 
| [https://github.com/WormBase/website/issues/assigned/joejimbo?direction=desc&labels=&milestone=10&sort=updated&state=open 3]
 
| [https://github.com/WormBase/website/issues/assigned/joejimbo?direction=desc&labels=&milestone=10&sort=updated&state=open 3]
 
| [https://github.com/WormBase/website/issues/assigned/none?direction=desc&labels=&milestone=10&sort=updated&state=open 7]
 
| [https://github.com/WormBase/website/issues/assigned/none?direction=desc&labels=&milestone=10&sort=updated&state=open 7]
| 6 days
+
|  
 
|}
 
|}
  
 
= Update on Intermod meeting / Last week in general =
 
= Update on Intermod meeting / Last week in general =
 +
Intermod meeting:
 +
* Intermine 2.0 (alpha)
 +
** no jsps
 +
** restful api
 +
** embeddable
 +
** beta later this year
 +
* Monarch group meeting on Thurs - no WB representative
 +
** bring data from various mods together
 +
* QueryBuilder page - add graph view (brainstorming)
 +
* Human mine discussed
 +
* request: Ability to share and edit other ppls templates
 +
** template versioning
 +
* correlating documentation - branding?
 +
* user profiles - personas
 +
 +
Developer meeting:
 +
* how we're running mines
 +
* Jenkins - rebuilds mine when mine folder updated
 +
 +
Breakout
 +
* didn't get to talk through much issues
 +
 +
Curations Issues - for Intermine
 +
* getting curators more involved, making templates
 +
* scheduled tutorials
 +
  
 
= Code review =
 
= Code review =
Line 32: Line 58:
  
 
=== Joachim ===
 
=== Joachim ===
* [https://github.com/WormBase/website/issues/1034 issue #1034]
+
* [https://github.com/WormBase/website/issues/#1034 #1034]
* [https://github.com/WormBase/website/issues/628 issue #628]
+
** Important - backend done. Front-end need to figure out
* [https://github.com/WormBase/website/issues/155 issue #155]
+
* [https://github.com/WormBase/website/issues/#628 #628]
* [https://github.com/WormBase/website/issues/910 issue #910]
+
** not major - WS239
* [https://github.com/WormBase/website/issues/909 issue #909]
+
* [https://github.com/WormBase/website/issues/#155 #155]
* Production issue Todd emailed about?
+
** gbrowse problems - reassign to lincoln
 +
* [https://github.com/WormBase/website/issues/#910 #910]
 +
** received files, will finish for WS238
 +
* [https://github.com/WormBase/website/issues/#909 #909]
 +
** not major - WS239
 +
* Production issue: stability issues WS236, seeing "panic: fold_constants JMPENV_PUSH returnedwormbase/extlib/lib/perl5/Plack/Util.pm line 118."
 +
** need to improved logging
  
 
=== JD  ===
 
=== JD  ===
 
* Intermine branding
 
* Intermine branding
 +
** header and footer working on
 +
 +
Intermine:
 +
* linkouts configured to WormBase
 +
# get mine up for IWM
 +
# release pipeline
 +
# extras
 +
* accounts - link them
  
 
* Cytoscape:
 
* Cytoscape:
 
** update on Process page
 
** update on Process page
** [https://github.com/WormBase/website/issues/741 issue #741]
+
** [https://github.com/WormBase/website/issues/#741]
 
***  Cell lineage browsing using Cytoscape - ready to start this?
 
***  Cell lineage browsing using Cytoscape - ready to start this?
 +
* on hold till the IWM
  
 
* Merge redundant columns in Curatorial history table
 
* Merge redundant columns in Curatorial history table
** [https://github.com/WormBase/website/issues/1141 issue #1141]
+
** [https://github.com/WormBase/website/issues/#1141]
  
 
* WormMine issues:
 
* WormMine issues:
#1201 There are many "Genes" with a Primary Identifier that is not of the format "WBGene0000####" Intermine
+
#"Genes" with a Primary Identifier that is not of the format "WBGene0000####" Intermine
#1170 Intermine: the cambridge logo in the footer is too prominent Intermine
+
#: the cambridge logo in the footer is too prominent Intermine
#1202 Minor issue: "Gene Name" under protein queries should be "Protein Name" Intermine
+
#: "Gene Name" under protein queries should be "Protein Name" Intermine
#1194 Spesies source: add genus, species, and other name Intermine
+
#: add genus, species, and other name Intermine
#1171 Searching for genes yields 3 fields in the header for each row Intermine
+
#yieldsheader for each row Intermine
#1172 The variation table on the gene report is non-informative Intermine
+
#on the gene report is non-informative Intermine
#1167 WormMine Anatomy terms are missing their primary name Intermine
+
#are missing their primary name Intermine
#1143 WormMine protein page error message Intermine
+
#error message Intermine
#1141 Merge redundant columns in Curatorial history table UI-data display
+
#using Cytoscape? feature request Webteam UI-data display
#942 User: CDS summary page feature request feature request HelpDesk Webteam
+
#for WormMine Intermine
#337 Process pages feature request data (new) Webteam
+
#message Intermine
#741 Cell lineage browsing using Cytoscape? feature request Webteam UI-data display
+
#exporter Intermine
#890 Create unpacking script for WormMine Intermine
+
#functionality Intermine
#881 Improve this error message Intermine
+
#WormMine use cases Intermine
#847 Enable working FASTA exporter Intermine
 
#848 Enable OpenID authentication functionality Intermine
 
#565 Open list of WormMine use cases Intermine
 
  
 
= Triage new issues =
 
= Triage new issues =

Latest revision as of 20:13, 21 May 2013

All meetings: WebDev Issues Meetings

Tuesday MayBoardroom

Milest

Release total tharris acabunoc jdmswong joejimbo unassigned due
WS238 58 13 26 2 3 7

Update on Intermod meeting / Last week in general

Intermod meeting:

  • Intermine 2.0 (alpha)
    • no jsps
    • restful api
    • embeddable
    • beta later this year
  • Monarch group meeting on Thurs - no WB representative
    • bring data from various mods together
  • QueryBuilder page - add graph view (brainstorming)
  • Human mine discussed
  • request: Ability to share and edit other ppls templates
    • template versioning
  • correlating documentation - branding?
  • user profiles - personas

Developer meeting:

  • how we're running mines
  • Jenkins - rebuilds mine when mine folder updated

Breakout

  • didn't get to talk through much issues

Curations Issues - for Intermine

  • getting curators more involved, making templates
  • scheduled tutorials


Code review

Issues in progress

Joachim

  • #1034
    • Important - backend done. Front-end need to figure out
  • #628
    • not major - WS239
  • #155
    • gbrowse problems - reassign to lincoln
  • #910
    • received files, will finish for WS238
  • #909
    • not major - WS239
  • Production issue: stability issues WS236, seeing "panic: fold_constants JMPENV_PUSH returnedwormbase/extlib/lib/perl5/Plack/Util.pm line 118."
    • need to improved logging

JD

  • Intermine branding
    • header and footer working on

Intermine:

  • linkouts configured to WormBase
  1. get mine up for IWM
  2. release pipeline
  3. extras
  • accounts - link them
  • Cytoscape:
    • update on Process page
    • [1]
      • Cell lineage browsing using Cytoscape - ready to start this?
  • on hold till the IWM
  • Merge redundant columns in Curatorial history table
  • WormMine issues:
  1. "Genes" with a Primary Identifier that is not of the format "WBGene0000####" Intermine
    the cambridge logo in the footer is too prominent Intermine
    "Gene Name" under protein queries should be "Protein Name" Intermine
    add genus, species, and other name Intermine
  2. yieldsheader for each row Intermine
  3. on the gene report is non-informative Intermine
  4. are missing their primary name Intermine
  5. error message Intermine
  6. using Cytoscape? feature request Webteam UI-data display
  7. for WormMine Intermine
  8. message Intermine
  9. exporter Intermine
  10. functionality Intermine
  11. WormMine use cases Intermine

Triage new issues