Difference between revisions of "Issues-5/21/2013"
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* [https://github.com/WormBase/website/issues/628 issue #628] | * [https://github.com/WormBase/website/issues/628 issue #628] | ||
* [https://github.com/WormBase/website/issues/155 issue #155] | * [https://github.com/WormBase/website/issues/155 issue #155] | ||
+ | ** gbrowse problems | ||
* [https://github.com/WormBase/website/issues/910 issue #910] | * [https://github.com/WormBase/website/issues/910 issue #910] | ||
+ | ** | ||
* [https://github.com/WormBase/website/issues/909 issue #909] | * [https://github.com/WormBase/website/issues/909 issue #909] | ||
+ | ** not major - WS239 | ||
* Production issue: stability issues WS236, seeing "panic: fold_constants JMPENV_PUSH returned 2 at /usr/local/wormbase/extlib/lib/perl5/Plack/Util.pm line 118." | * Production issue: stability issues WS236, seeing "panic: fold_constants JMPENV_PUSH returned 2 at /usr/local/wormbase/extlib/lib/perl5/Plack/Util.pm line 118." | ||
+ | ** need to improved logging | ||
+ | |||
+ | |||
=== JD === | === JD === | ||
Line 74: | Line 80: | ||
# release pipeline | # release pipeline | ||
# extras | # extras | ||
− | + | * accounts - link them | |
* Cytoscape: | * Cytoscape: | ||
Line 80: | Line 86: | ||
** [https://github.com/WormBase/website/issues/741 issue #741] | ** [https://github.com/WormBase/website/issues/741 issue #741] | ||
*** Cell lineage browsing using Cytoscape - ready to start this? | *** Cell lineage browsing using Cytoscape - ready to start this? | ||
+ | * on hold till the IWM | ||
* Merge redundant columns in Curatorial history table | * Merge redundant columns in Curatorial history table |
Revision as of 19:49, 21 May 2013
All meetings: WebDev Issues Meetings
Tuesday May 21th, 2pm, 5th floor NW Boardroom
Contents
Milestone update
Release | total | tharris | acabunoc | jdmswong | joejimbo | unassigned | due |
---|---|---|---|---|---|---|---|
WS238 | 58 | 13 | 26 | 2 | 3 | 7 | 6 days |
Update on Intermod meeting / Last week in general
Intermod meeting:
- Intermine 2.0 (alpha)
- no jsps
- restful api
- embeddable
- beta later this year
- Monarch group meeting on Thurs - no WB representative
- bring data from various mods together
- QueryBuilder page - add graph view (brainstorming)
- Human mine discussed
- request: Ability to share and edit other ppls templates
- template versioning
- correlating documentation - branding?
- user profiles - personas
Developer meeting:
- how we're running mines
- Jenkins - rebuilds mine when mine folder updated
Breakout
- didn't get to talk through much issues
Curations Issues - for Intermine
- getting curators more involved, making templates
- scheduled tutorials
Code review
Issues in progress
Joachim
- issue #1034
- issue #628
- issue #155
- gbrowse problems
- issue #910
- issue #909
- not major - WS239
- Production issue: stability issues WS236, seeing "panic: fold_constants JMPENV_PUSH returned 2 at /usr/local/wormbase/extlib/lib/perl5/Plack/Util.pm line 118."
- need to improved logging
JD
- Intermine branding
- header and footer working on
Intermine:
- linkouts configured to WormBase
- get mine up for IWM
- release pipeline
- extras
- accounts - link them
- Cytoscape:
- update on Process page
- issue #741
- Cell lineage browsing using Cytoscape - ready to start this?
- on hold till the IWM
- Merge redundant columns in Curatorial history table
- WormMine issues:
- 1201 There are many "Genes" with a Primary Identifier that is not of the format "WBGene0000####" Intermine
- 1170 Intermine: the cambridge logo in the footer is too prominent Intermine
- 1202 Minor issue: "Gene Name" under protein queries should be "Protein Name" Intermine
- 1194 Spesies source: add genus, species, and other name Intermine
- 1171 Searching for genes yields 3 fields in the header for each row Intermine
- 1172 The variation table on the gene report is non-informative Intermine
- 1167 WormMine Anatomy terms are missing their primary name Intermine
- 1143 WormMine protein page error message Intermine
- 741 Cell lineage browsing using Cytoscape? feature request Webteam UI-data display
- 890 Create unpacking script for WormMine Intermine
- 881 Improve this error message Intermine
- 847 Enable working FASTA exporter Intermine
- 848 Enable OpenID authentication functionality Intermine
- 565 Open list of WormMine use cases Intermine