Difference between revisions of "How are the repeats determined?"

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Repeats are determined in several ways.  
 
Repeats are determined in several ways.  
  
<br>  
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*1) [[http://www.repeatmasker.org RepeatMasker]]<br>
  
There are RepeatMasker libraries available for ''C.elegans ''and''C.briggsae'' are available from the [[http://www.sanger.ac.uk/Projects/C_elegans/REPEATS/ Sanger Institute pages]]
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There are RepeatMasker libraries available for ''C.elegans ''and''C.briggsae'' are available from the [[http://www.sanger.ac.uk/Projects/C_elegans/REPEATS/ Sanger Institute pages]].&nbsp; These pages also have some description of the motifs identified.<br>
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*2) [[http://tandem.bu.edu/trf/trf.html Tandem Repeat Finder.]] by G. Benson
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*3) <span style="font-weight: bold;"></span>[[http://www.ncbi.nlm.nih.gov/pubmed/7514951?dopt=Abstract dust]]a low-complexity filter for nucleotide sequences<br>

Revision as of 09:07, 17 June 2008

Repeats are determined in several ways.

There are RepeatMasker libraries available for C.elegans andC.briggsae are available from the [Sanger Institute pages].  These pages also have some description of the motifs identified.

  • 3) [dust]a low-complexity filter for nucleotide sequences