Difference between revisions of "How WormBase writes a concise description"
From WormBaseWiki
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Molecular identity | Molecular identity | ||
<Gene> encodes .....; | <Gene> encodes .....; | ||
| − | |||
Orthology/Similarity | Orthology/Similarity | ||
<Gene> is (drop down with values:orthologous,similar) to .....; | <Gene> is (drop down with values:orthologous,similar) to .....; | ||
| − | |||
Process/Pathway | Process/Pathway | ||
<Gene> is (drop-down with values: | <Gene> is (drop-down with values: | ||
required,functions,regulates,is involved in,is part of) .....; | required,functions,regulates,is involved in,is part of) .....; | ||
(Sentence needs to be cloned if required) | (Sentence needs to be cloned if required) | ||
| − | |||
Genetic interaction with respect to Process or Pathway | Genetic interaction with respect to Process or Pathway | ||
<Gene> interacts genetically with (drop-down with ontology:WBGenes) with | <Gene> interacts genetically with (drop-down with ontology:WBGenes) with | ||
respect to ........; | respect to ........; | ||
| − | |||
Physical interaction | Physical interaction | ||
<Protein> physically interacts (drop-down with values: invitro, invivo) with | <Protein> physically interacts (drop-down with values: invitro, invivo) with | ||
(drop-down with proteins); | (drop-down with proteins); | ||
| − | |||
Molecular Function | Molecular Function | ||
<Protein> has (drop down with ontology:GO molecular function) or ……… activity; | <Protein> has (drop down with ontology:GO molecular function) or ……… activity; | ||
| − | |||
Tissue Expression | Tissue Expression | ||
<Gene/Protein> is expressed in …………and expression in ......is (drop-down | <Gene/Protein> is expressed in …………and expression in ......is (drop-down | ||
with values: positively, negatively) regulated by .......; | with values: positively, negatively) regulated by .......; | ||
| − | |||
Cellular Component/sub-cellular localization | Cellular Component/sub-cellular localization | ||
<Protein> is localized to (drop-down with ontology:GO cellular component) | <Protein> is localized to (drop-down with ontology:GO cellular component) | ||
or .......and expression in .....is (drop-down with values: | or .......and expression in .....is (drop-down with values: | ||
positively, negatively) regulated by (drop-down with proteins) | positively, negatively) regulated by (drop-down with proteins) | ||
Revision as of 22:45, 1 April 2013
Writing a concise description for a C. elegans gene
Key facts captured in a concise description:
- Molecular identity
- Orthology
- Process/Pathway
- Genetic interactions
- Physical interactions
- Function/Molecular Activity
- Tissue Expression
- Sub cellular localization
Molecular identity <Gene> encodes .....; Orthology/Similarity <Gene> is (drop down with values:orthologous,similar) to .....; Process/Pathway <Gene> is (drop-down with values: required,functions,regulates,is involved in,is part of) .....; (Sentence needs to be cloned if required) Genetic interaction with respect to Process or Pathway <Gene> interacts genetically with (drop-down with ontology:WBGenes) with respect to ........; Physical interaction <Protein> physically interacts (drop-down with values: invitro, invivo) with (drop-down with proteins); Molecular Function <Protein> has (drop down with ontology:GO molecular function) or ……… activity; Tissue Expression <Gene/Protein> is expressed in …………and expression in ......is (drop-down with values: positively, negatively) regulated by .......; Cellular Component/sub-cellular localization <Protein> is localized to (drop-down with ontology:GO cellular component) or .......and expression in .....is (drop-down with values: positively, negatively) regulated by (drop-down with proteins)
