Difference between revisions of "How WormBase writes a concise description"
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*Tissue Expression | *Tissue Expression | ||
*Sub cellular localization | *Sub cellular localization | ||
+ | |||
+ | |||
+ | Molecular identity | ||
+ | <Gene> encodes .....; | ||
+ | |||
+ | Orthology/Similarity | ||
+ | <Gene> is (drop down with values:orthologous,similar) to .....; | ||
+ | |||
+ | Process/Pathway | ||
+ | <Gene> is (drop-down with values: | ||
+ | required,functions,regulates,is involved in,is part of) .....; | ||
+ | (Sentence needs to be cloned if required) | ||
+ | |||
+ | Genetic interaction with respect to Process or Pathway | ||
+ | <Gene> interacts genetically with (drop-down with ontology:WBGenes) with | ||
+ | respect to ........; | ||
+ | |||
+ | Physical interaction | ||
+ | <Protein> physically interacts (drop-down with values: invitro, invivo) with | ||
+ | (drop-down with proteins); | ||
+ | |||
+ | Molecular Function | ||
+ | <Protein> has (drop down with ontology:GO molecular function) or ……… activity; | ||
+ | |||
+ | Tissue Expression | ||
+ | <Gene/Protein> is expressed in …………and expression in ......is (drop-down | ||
+ | with values: positively, negatively) regulated by .......; | ||
+ | |||
+ | Cellular Component/sub-cellular localization | ||
+ | <Protein> is localized to (drop-down with ontology:GO cellular component) | ||
+ | or .......and expression in .....is (drop-down with values: | ||
+ | positively, negatively) regulated by (drop-down with proteins) |
Revision as of 22:44, 1 April 2013
Writing a concise description for a C. elegans gene
Key facts captured in a concise description:
- Molecular identity
- Orthology
- Process/Pathway
- Genetic interactions
- Physical interactions
- Function/Molecular Activity
- Tissue Expression
- Sub cellular localization
Molecular identity <Gene> encodes .....;
Orthology/Similarity <Gene> is (drop down with values:orthologous,similar) to .....;
Process/Pathway <Gene> is (drop-down with values: required,functions,regulates,is involved in,is part of) .....; (Sentence needs to be cloned if required)
Genetic interaction with respect to Process or Pathway <Gene> interacts genetically with (drop-down with ontology:WBGenes) with respect to ........; Physical interaction <Protein> physically interacts (drop-down with values: invitro, invivo) with (drop-down with proteins);
Molecular Function <Protein> has (drop down with ontology:GO molecular function) or ……… activity;
Tissue Expression <Gene/Protein> is expressed in …………and expression in ......is (drop-down with values: positively, negatively) regulated by .......;
Cellular Component/sub-cellular localization <Protein> is localized to (drop-down with ontology:GO cellular component) or .......and expression in .....is (drop-down with values: positively, negatively) regulated by (drop-down with proteins)