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(New page: Transgene Marker_for Reference Summary jcIs1 adherens junction in epithelial cells WBPaper00031556 [ajm-1::gfp; unc-29(+); rol-6(... mcIs47 adherens junction in epithelial cells ...)
 
 
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Transgene  Marker_for  Reference  Summary
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For help on specific topics, please feel free to e-mail the helpdesk (<u>help@wormbase.org</u>); It may also be helpful to CC your question or request to the individual(s) that are most likely to be the responsible parties. Below is a list of Worm Base staff and their respective areas of expertise.
jcIs1 adherens junction in epithelial cells WBPaper00031556 [ajm-1::gfp; unc-29(+); rol-6(...
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mcIs47 adherens junction in epithelial cells WBPaper00031556 [dlg-1::GFP]...
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gmIs12 ADL neurons WBPaper00004727 [srb-6::gfp]...
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= '''Principal Investigators''' =
otIs24 ADL neurons WBPaper00004727 [sre-1::gfp; dpy-20(+)]...
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WBPaper00031849Is1 adluminal plasma membrane WBPaper00031849 [??::OPT-2-GFP]...
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John Spieth (jspieth@watson.wustl.edu) [WashU]  
oyIs18 AFD cilia WBPaper00029131 [gcy-8::gfp; lin-15(+)]...
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oyIs17 AFD neurons WBPaper00004727 [gcy-8::gfp; lin-15(+)]...
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Lincoln Stein (lincoln.stein@gmail.com) [OICR]  
otIs14 AIM and ASI neurons WBPaper00004727 [zig-3::gfp] promoter fusion. ...
+
 
otIs62 AIY and AIA neurons WBPaper00004727 [sra-11-3::gfp; pRF4]...
+
Paul Sternberg (pws@caltech.edu) [Caltech]  
mgIs18 AIY neurons WBPaper00006180 [ttx-3::gfp]...
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otIs122 AIY neurons WBPaper00004727 [sra-11-3::gfp; unc-4(+)]...
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Paul Kersey [EBI]
otIs123 AIY neurons WBPaper00004727 [sra-11-3::gfp; unc-4(+)]...
+
 
otIs133 AIY neurons WBPaper00031565 [ttx-3promB::rfp; pNC4.2(unc-4...
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Matt Berriman [WTSI]
utEx54 AIY neurons WBPaper00004727 [C36B7.7::gfp; pRF4]...
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otIs121 AIY neurons marked by RFP. WBPaper00006180 [ttx-3::rfp; unc-122::gfp]...
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-------------------------------------
WBPaper00006034Is1 AIZ interneurons WBPaper00006034 [lin-11::gfp]...
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mgIs21 AIZ neurons WBPaper00004727 [lin-11::gfp]...
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= '''Web Development Team''' =
edIs6 all neurons WBPaper00031556 [unc-119::gfp]...
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evIs111 all neurons WBPaper00031556 [F25B3.3::GFP]...
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== '''[http://www.oicr.on.ca/ Ontario Institute for Cancer Research]''' ==
otIs117 all neurons WBPaper00004727 [unc-33::gfp; unc-4(+)]...
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otIs45 all neurons WBPaper00004727 [unc-119::gfp]...
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'''Todd Harris''' (todd@wormbase.org) - Project manager; lead website developer and information architect
WBPaper00031556Ex1 all rectal cells and P12.pa WBPaper00031556 [lin-26::gfp; rol-6(d)]...
+
 
syIs107 anchor cell WBPaper00032102 [lin-3({Delta}pes-10)::GFP]...
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Abigail Cabunoc (Abigail.Cabunoc@oicr.on.ca)
mcEx242 apical membrane in epithelial cells WBPaper00031556 [che-14::gfp; rol-6(d)]...
+
 
otIs114 ASEL and excretory gland WBPaper00006052 [lim-6::gfp, rol-6(d)]...
+
Norie de la Cruz (noriedlc3@gmail.com)
otIs6 ASEL and excretory gland WBPaper00006052 [lim-6::gfp, rol-6(d)]...
+
 
otIs3 ASEL neuron WBPaper00006052 [gcy-7::gfp]...
+
Xiaoqi Shi (xiaoqi.shi@oicr.on.ca)
otEx2645 ASEL, ASER, AWCL, AWCR neurons WBPaper00028430 [ceh-36::gfp::unc-54 3'UTR] tr...
+
 
otEx2646 ASEL, ASER, AWCL, AWCR neurons WBPaper00028430 [ceh-36::gfp::unc-54 3'UTR] tr...
+
 
ntIs1 ASER neuron WBPaper00031375 [gcy-5::gfp]...
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otIs186 ASER neuron WBPaper00032078 [gcy-5::gfp]...
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= '''Worm Mart''' =
otIs125 ASERL and ASER neurons WBPaper00006052 [flp-6::gfp]...
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WBPaper00031375Ex1 ASH neurons WBPaper00031375 [sra-6::venus]...
+
Ruihua Fang (rfang@caltech.edu)
otIs7 ASI neurons WBPaper00004727 [zig-2::gfp] promoter fusion. ...
+
 
saIs7 ASI neurons WBPaper00004727 [daf-7::gfp]...
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otEx93 AVK neurons WBPaper00004727 [flp-1::gfp]...
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juIs8 AVL neuron WBPaper00004727 [unc-25::gfp]...
+
= '''Sequence Curation''' =
kyIs53 AWA cilia WBPaper00029131 [odr-10::gfp]. GFP tagged full...
+
 
kyIs37 AWA neurons WBPaper00004727 [odr-10::gfp]. With the odr-10...
+
The mailing list to contact all gene structure sequence curators is:
kyIs104 AWB cilia WBPaper00029131 [str-1::gfp]...
+
'''seqcur@wormbase.org'''
kyIs140 AWC neurons WBPaper00004727 [str-2::gfp]...
+
 
juIs73 axons of VD/DD neurons. WBPaper00032090 [unc-25::gfp]...
+
== '''[http://genome.wustl.edu/ Washington University at St. Louis]''' ==
cgc6572Is1 centrosome WBPaper00024346 [pie-1::gfp-spd-2] translation...
+
 
ltIs24 centrosome WBPaper00031431 [pAZ132; unc-119(+); pie-1::GF...
+
Tamberlyn Bieri (tbieri@watson.wustl.edu)
ruIs32 centrosome WBPaper00031431 [pie-1::GFP-his-11, unc-119(+)...
+
 
egIs1 CEP neurons WBPaper00031917 [dat-1::gfp]...
+
Phil Ozersky (pozersky@watson.wustl.edu)
nsIs105 CEPsh cells WBPaper00031917 [hlh-17::GFP]...
+
 
nsIs108 CEPsh cells WBPaper00031917 [ptr-10::myrRFP]...
+
William Nash (wnash@watson.wustl.edu)
nsIs136 CEPsh cells WBPaper00031917 [ptr-10::myrRFP]...
+
 
myEx552 cilium structure in male specific neurons WBPaper00031566 [pkd-2::tbb-4-tdTomato]...
+
== '''[http://www.sanger.ac.uk/ Wellcome Trust Sanger Institute]''' ==
oxIs22 Clustering of acetylcholine receptor in muscles. WBPaper00031112 [unc-49B::gfp]...
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zuIs45 cytokinetic signaling WBPaper00031431 [nmy-2::gfp]...
+
Kevin Howe (klh@sanger.ac.uk) - ''Team Leader''
evIs82b DA and DB motor axons WBPaper00032506 [unc-129::gfp] transcriptional...
+
 
wIs137 descendants of intestinal cells WBPaper00031534 [end-3::END-3(P202L)-GFP; rol-...
+
==C. elegans Gene Curation (CDS, Pseudogene, RNA)==
vtIs1 dopamine neurons WBPaper00005147 [dat-1::gfp; rol-6] transcript...
+
 
vsIs100 egg laying muscles (vulval muscle and uterine muscle). WBPaper00031438 [ELM::GFP, lin-15(+)]. ELM sta...
+
[[User:Pdavis|Paul Davis]] (paul.davis@sanger.ac.uk)
enIs7 engulfing cells WBPaper00031556 [ced-1::ced-1-GFP; unc-76(+)]...
+
 
oxIs12 GABA motor neurons WBPaper00031112 [unc-47::gfp]...
+
[[User:Gwilliams|Gary Williams]] (gw3@sanger.ac.uk)
kyIs179 HSN neurons WBPaper00031910 [unc-86::gfp, lin-15(+)]...
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rtEx238 HSN neurons WBPaper00032908 [nlp-1::gfp]...
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==Sequence Features==
vsIs97 HSN neurons WBPaper00031438 [HSN::DsRed2, lin-15(+)]...
+
 
rrIs1 intestinal cells WBPaper00031534 [elt-2::GFP, unc-119(+)]...
+
[[User:Pdavis|Paul Davis]] (paul.davis@sanger.ac.uk)
ayIs7 M cell WBPaper00032077 [hlh-8::gfp]...
+
 
WBPaper00031505Ex1 male specific sensory neurons WBPaper00031505 [pkd-2::gfp] transcriptional f...
+
[[User:Gwilliams|Gary Williams]] (gw3@sanger.ac.uk)
mnIs17 Marker for the amphid and phasmid cilia. WBPaper00031375 [osm-6::gfp; unc-36(+)]...
+
 
WBPaper00003790Is1 mitochondria WBPaper00003790 [myo-3::mitochondrial signal s...
+
[[User:Matuli|Mary Ann Tuli]] (mt3@sanger.ac.uk)
WBPaper00031376Is1 mitochondria WBPaper00031376 [myo-3::TOM20-mRFP myo-3::AAT-...
+
 
trIs25 muscle arms WBPaper00025227 [him-4::MB::YFP, F25B3.3::DsRe...
+
==Operons, Public Sequence Data (EST, OST, RST, mRNA), Transposons==
trIs30 muscle arms WBPaper00025227 [(him-4p::MB::YFP; hmr-1b::DsR...
+
 
ccIs4251 muscles WBPaper00031556 [myo-3::Ngfp-lacZ; myo-3::Mtgf...
+
[[User:Pdavis|Paul Davis]] (paul.davis@sanger.ac.uk)
zdIs13 NSM neurons WBPaper00031671 [tph-1::gfp] transcriptional f...
+
 
ccIs4810 nuclear lamina WBPaper00026936 [lmn-1::gfp]. A fusion of GFP ...
+
== Wellcome/Sanger Mirror, EnsEMBL, Comparative Genomics==
ccIs4811 nuclear lamina WBPaper00026936 [lmn-1::lmn-1-gfp-lmn-1 3UTR; ...
+
 
ccIs4812 nuclear lamina WBPaper00026936 [lmn-1::lmn-1-gfp-lmn-1 3UTR; ...
+
Michael Paulini (mh6@sanger.ac.uk)
kyIs141 OLQ cilia WBPaper00029131 [osm-9::GFP; lin-15(+)]...
+
 
arEx627 PDA cell WBPaper00031556 [exp-1::GFP; dpy-20(+)] transc...
+
==Strains, Variations==
fpIs1 PDA cell WBPaper00031556 [ace-3/4::gfp; pha-1(+)] trans...
+
 
syIs63 PDA cell WBPaper00031556 [cog-1::cog-1-gfp]...
+
[[User:Matuli|Mary Ann Tuli]] (mt3@sanger.ac.uk)
WBPaper00029131Ex1 Phasmid channel cilia WBPaper00029131 [osm-1::gfp; rol-6(su1006)]...
+
 
axEx1094 Posterior cortex/Cortical polarity. WBPaper00024346 [pie-1::PAR-2-GFP]. Amino-term...
+
==Mass Spec Data, Transcription Factors==
WBPaper00031996Ex1 presynaptic sites in inhibitory GABAergic neurons. WBPaper00031996 [unc-25::sng-1-gfp]...
+
 
krIs1 Presynaptic terminals were visualized using unc-47::SNB-CFP. Postsynaptic GABA receptor fields were visualized by unc-49::UNC-49B::YFP. WBPaper00005798 [unc-47::SNB-CFP; UNC-49::YFP;...
+
[[User:Gwilliams|Gary Williams]] (gw3@sanger.ac.uk)
ayIs4 primary fate VPC WBPaper00032102 [egl-17::gfp]. Integrated tran...
+
 
arIs92 Primary fate VPC. WBPaper00026909 [egl-17::cfp-lacZ]...
+
= '''Nomenclature & Gene Names''' =
oyIs14 PVQ neurons WBPaper00005633 [sra-6::gfp]...
+
 
otIs85 PVT neuron WBPaper00005633 [srq-1::gfp; rol-6(d)]. The sr...
+
For questions or requests regarding gene names and/or nomenclature, please e-mail: <u>genenames@wormbase.org</u>
otIs90 PVT neuron WBPaper00005633 [pin-2::gfp; rol-6(d)]...
+
 
syIs7 PVT neuron WBPaper00005633 [gpa-2::lacZ; dpy-20(+)]...
+
'''Jonathan Hodgkin'''
bxIs7 rectal cells WBPaper00031556 [egl-5::gfp]. The egl-5::gfp r...
+
 
kuIs34 rectal cells WBPaper00031556 [sem-4::gfp] translational fus...
+
[[User:Matuli|Mary Ann Tuli]] (mt3@sanger.ac.uk)
kuIs36 rectal cells WBPaper00031556 [egl-26::gfp] transcriptional ...
+
 
lqIs4 RID neuron WBPaper00006180 [ceh-10::gfp; lin-15]...
+
 
otIs12 RID neuron WBPaper00006180 [zig-5::gfp] promoter fusion. ...
+
 
otIs33 RID neuron WBPaper00006180 [kal-1::gfp]...
+
= '''Biological Data Curation''' =
nuIs1 RIS neuron WBPaper00006180 [glr-1::gfp]...
+
 
otIs11 RIS neuron WBPaper00006180 [zig-5::gfp] promoter fusion. ...
+
== '''[http://www.caltech.edu/ California Institute of Technology]'''  ==
otIs39 RIS neuron WBPaper00006180 [unc-47(del)::gfp; lin-15(+)]....
+
 
wIs51 Seam cell nuclei. WBPaper00030774 [SCM::gfp, unc-119(+)]. SCM st...
+
==Postgres Curation Database==
wIs1 Seam cell. WBPaper00002772 [SCM::nls-lacZ; rol-6(su1006)]...
+
 
wIs2 Seam cell. WBPaper00002772 [SCM::nls-lacZ; rol-6(su1006)]...
+
Juancarlos Chan (azurebrd@drachma.ugcs.caltech.edu)
oyIs31 secondary fate VPC WBPaper00032102 [lin-11::gfp] transcriptional ...
+
 
zhIs4 secondary fate VPC WBPaper00032102 ...
+
==Expression Pattern, Microarray, SPELL, citace==
mfIs42 Secondary fate VPC. WBPaper00029401 [lip-1::yfp]...
+
 
nIs106 Secondary fate VPC. WBPaper00026909 [lin-11::gfp]. containing 5.2 ...
+
Wen Chen (wen@athena.caltech.edu)
kyIs123 SMDD neurons WBPaper00004727 [ZC21.2::gfp; lin-15(+)]...
+
 
nIs52 Synaptic vesicle. WBPaper00031112 [unc-25::SNB-1-GFP]...
+
==Bioinformatics, SVM firstpass==
arIs101 Tertiary fate VPC. WBPaper00026909 [K09H11.1::yfp]...
+
 
uvEx5 touch receptor neurons WBPaper00027349 [mec-4::GFP]...
+
Ruihua Fang (rfang@caltech.edu)
zdIs5 touch receptor neurons WBPaper00032072 [mec-4::GFP]...
+
 
WBPaper00032901Is1 VA motorneuron WBPaper00032901 [unc-4::gfp]...
+
==RNAi Curation==
qqIs1 vas deferens WBPaper00032027 [plg-1::gfp, unc-119(+)] trans...
+
 
vsIs13 VC neurons WBPaper00006049 [pes-10::gfp]. A 500 bp VC enh...
+
Gary Schindelman (garys@caltech.edu)
syIs186 VPC progeny WBPaper00032129 [pes-10::7XTCF-mCherry-let-858...
+
 
syIs187 VPC progeny WBPaper00032129 [pes-10::7XTCF-mCherry-let-858...
+
Chris Grove (cgrove@caltech.edu)
syIs188 VPC progeny WBPaper00032129 [pes-10::7XTCF-mCherry-let-858...
+
 
 +
==Gene Ontology==
 +
 
 +
Kimberly Van Auken (vanauken@caltech.edu)
 +
 
 +
Ranjana Kishore (ranjana@its.caltech.edu)
 +
 
 +
==Anatomy Ontology, Cell Function==
 +
 
 +
Raymond Lee (raymond@caltech.edu)
 +
 
 +
==Person Curation==
 +
 
 +
Cecilia Nakamura (cecilia@tazendra.caltech.edu)
 +
 
 +
==Picture, Expression Pattern Curation==
 +
 
 +
Daniela Raciti (draciti@its.caltech.edu)
 +
 
 +
==Paper Curation, Concise Description==
 +
 
 +
Kimberly Van Auken (vanauken@caltech.edu)
 +
 
 +
==WormBook, Literature Acquisition==
 +
 
 +
Daniel Wang (qwang@its.caltech.edu)
 +
 
 +
==Gene Regulation, Interaction, Antibody, Position Matrix==
 +
 
 +
Xiaodong Wang (xdwang@caltech.edu)
 +
 
 +
==Transgene, Molecule, Phenotype (non-RNAi objects), Process Page==
 +
 
 +
Karen Yook (karen@wormbase.org)
 +
 
 +
==Caltech Mirror==
 +
 
 +
Raymond Lee (raymond@caltech.edu)
 +
 
 +
 
 +
 
 +
= '''Textpresso''' =
 +
 
 +
'''Hans-Michael Mueller''' (mueller@its.caltech.edu)<br>
 +
 
 +
Arun Rangarajan (arunr@caltech.edu)<br>
 +
 
 +
Yuling Li (liyuling@caltech.edu)<br>
 +
 
 +
 
 +
 
 +
= '''GENETICS Journal hyperlink mark-up''' =
 +
 
 +
Arun Rangarajan (arunr@caltech.edu)<br>
 +
 
 +
Karen Yook (karen@wormbase.org)

Latest revision as of 16:42, 1 August 2011

For help on specific topics, please feel free to e-mail the helpdesk (help@wormbase.org); It may also be helpful to CC your question or request to the individual(s) that are most likely to be the responsible parties. Below is a list of Worm Base staff and their respective areas of expertise.


Principal Investigators

John Spieth (jspieth@watson.wustl.edu) [WashU]

Lincoln Stein (lincoln.stein@gmail.com) [OICR]

Paul Sternberg (pws@caltech.edu) [Caltech]

Paul Kersey [EBI]

Matt Berriman [WTSI]


Web Development Team

Ontario Institute for Cancer Research

Todd Harris (todd@wormbase.org) - Project manager; lead website developer and information architect

Abigail Cabunoc (Abigail.Cabunoc@oicr.on.ca)

Norie de la Cruz (noriedlc3@gmail.com)

Xiaoqi Shi (xiaoqi.shi@oicr.on.ca)


Worm Mart

Ruihua Fang (rfang@caltech.edu)


Sequence Curation

The mailing list to contact all gene structure sequence curators is: seqcur@wormbase.org

Washington University at St. Louis

Tamberlyn Bieri (tbieri@watson.wustl.edu)

Phil Ozersky (pozersky@watson.wustl.edu)

William Nash (wnash@watson.wustl.edu)

Wellcome Trust Sanger Institute

Kevin Howe (klh@sanger.ac.uk) - Team Leader

C. elegans Gene Curation (CDS, Pseudogene, RNA)

Paul Davis (paul.davis@sanger.ac.uk)

Gary Williams (gw3@sanger.ac.uk)

Sequence Features

Paul Davis (paul.davis@sanger.ac.uk)

Gary Williams (gw3@sanger.ac.uk)

Mary Ann Tuli (mt3@sanger.ac.uk)

Operons, Public Sequence Data (EST, OST, RST, mRNA), Transposons

Paul Davis (paul.davis@sanger.ac.uk)

Wellcome/Sanger Mirror, EnsEMBL, Comparative Genomics

Michael Paulini (mh6@sanger.ac.uk)

Strains, Variations

Mary Ann Tuli (mt3@sanger.ac.uk)

Mass Spec Data, Transcription Factors

Gary Williams (gw3@sanger.ac.uk)

Nomenclature & Gene Names

For questions or requests regarding gene names and/or nomenclature, please e-mail: genenames@wormbase.org

Jonathan Hodgkin

Mary Ann Tuli (mt3@sanger.ac.uk)


Biological Data Curation

California Institute of Technology

Postgres Curation Database

Juancarlos Chan (azurebrd@drachma.ugcs.caltech.edu)

Expression Pattern, Microarray, SPELL, citace

Wen Chen (wen@athena.caltech.edu)

Bioinformatics, SVM firstpass

Ruihua Fang (rfang@caltech.edu)

RNAi Curation

Gary Schindelman (garys@caltech.edu)

Chris Grove (cgrove@caltech.edu)

Gene Ontology

Kimberly Van Auken (vanauken@caltech.edu)

Ranjana Kishore (ranjana@its.caltech.edu)

Anatomy Ontology, Cell Function

Raymond Lee (raymond@caltech.edu)

Person Curation

Cecilia Nakamura (cecilia@tazendra.caltech.edu)

Picture, Expression Pattern Curation

Daniela Raciti (draciti@its.caltech.edu)

Paper Curation, Concise Description

Kimberly Van Auken (vanauken@caltech.edu)

WormBook, Literature Acquisition

Daniel Wang (qwang@its.caltech.edu)

Gene Regulation, Interaction, Antibody, Position Matrix

Xiaodong Wang (xdwang@caltech.edu)

Transgene, Molecule, Phenotype (non-RNAi objects), Process Page

Karen Yook (karen@wormbase.org)

Caltech Mirror

Raymond Lee (raymond@caltech.edu)


Textpresso

Hans-Michael Mueller (mueller@its.caltech.edu)

Arun Rangarajan (arunr@caltech.edu)

Yuling Li (liyuling@caltech.edu)


GENETICS Journal hyperlink mark-up

Arun Rangarajan (arunr@caltech.edu)

Karen Yook (karen@wormbase.org)