Difference between revisions of "Help:Contents"

From WormBaseWiki
Jump to navigationJump to search
m
 
(24 intermediate revisions by 3 users not shown)
Line 1: Line 1:
For help on specific topics, please feel free to e-mail the helpdesk (help@wormbase.org); It may also be helpful to CC your question or request to the individual(s) that are most likely the responsible parties. Below is a list of Worm Base staff and their respective areas of expertise.
+
For help on specific topics, please feel free to e-mail the helpdesk (<u>help@wormbase.org</u>); It may also be helpful to CC your question or request to the individual(s) that are most likely to be the responsible parties. Below is a list of Worm Base staff and their respective areas of expertise.
  
  
 
= '''Principal Investigators''' =
 
= '''Principal Investigators''' =
 
Richard Durbin (rd@sanger.ac.uk) [WTSI]
 
  
 
John Spieth (jspieth@watson.wustl.edu) [WashU]  
 
John Spieth (jspieth@watson.wustl.edu) [WashU]  
Line 11: Line 9:
  
 
Paul Sternberg (pws@caltech.edu) [Caltech]  
 
Paul Sternberg (pws@caltech.edu) [Caltech]  
-------------------------------------
 
  
 +
Paul Kersey [EBI]
 +
 +
Matt Berriman [WTSI]
  
 +
-------------------------------------
  
=Web Development Team=
+
= '''Web Development Team''' =
  
 
== '''[http://www.oicr.on.ca/ Ontario Institute for Cancer Research]''' ==
 
== '''[http://www.oicr.on.ca/ Ontario Institute for Cancer Research]''' ==
Line 29: Line 30:
  
  
=Worm Mart=
+
= '''Worm Mart''' =
  
 
Ruihua Fang (rfang@caltech.edu)
 
Ruihua Fang (rfang@caltech.edu)
Line 35: Line 36:
  
  
=Sequence Curation=
+
= '''Sequence Curation''' =
 +
 
 +
The mailing list to contact all gene structure sequence curators is:
 +
'''seqcur@wormbase.org'''
  
 
== '''[http://genome.wustl.edu/ Washington University at St. Louis]''' ==
 
== '''[http://genome.wustl.edu/ Washington University at St. Louis]''' ==
Line 45: Line 49:
 
William Nash (wnash@watson.wustl.edu)
 
William Nash (wnash@watson.wustl.edu)
  
 +
== '''[http://www.sanger.ac.uk/ Wellcome Trust Sanger Institute]''' ==
 +
 +
Kevin Howe (klh@sanger.ac.uk) - ''Team Leader''
 +
 +
==C. elegans Gene Curation (CDS, Pseudogene, RNA)==
 +
 +
[[User:Pdavis|Paul Davis]] (paul.davis@sanger.ac.uk)
 +
 +
[[User:Gwilliams|Gary Williams]] (gw3@sanger.ac.uk)
 +
 +
==Sequence Features==
 +
 +
[[User:Pdavis|Paul Davis]] (paul.davis@sanger.ac.uk)
 +
 +
[[User:Gwilliams|Gary Williams]] (gw3@sanger.ac.uk)
 +
 +
[[User:Matuli|Mary Ann Tuli]] (mt3@sanger.ac.uk)
 +
 +
==Operons, Public Sequence Data (EST, OST, RST, mRNA), Transposons==
  
== '''[http://www.sanger.ac.uk/ Wellcome Trust Sanger Institute]''' ==
+
[[User:Pdavis|Paul Davis]] (paul.davis@sanger.ac.uk)
  
[[User:Pdavis|Paul Davis]] (paul.davis@sanger.ac.uk) - Special Skills: ''C. elegans Gene Curation(CDS,Pseudogene,RNA), Sequence_Features, Operons,  Public Sequence Data(EST,OST,RST,mRNA), Transposons'' 
+
== Wellcome/Sanger Mirror, EnsEMBL, Comparative Genomics==
  
Michael Paulini (mh6@sanger.ac.uk) - ''Mirrors, EnsEMBL, Comparative Genomics''
+
Michael Paulini (mh6@sanger.ac.uk)
  
Kevin Howe (klh@sanger.ac.uk) - ''Team Leader''
+
==Strains, Variations==
  
[[User:Matuli|Mary Ann Tuli]] (mt3@sanger.ac.uk) - ''Strains, Variations, Sequence Features''
+
[[User:Matuli|Mary Ann Tuli]] (mt3@sanger.ac.uk)
  
[[User:Gwilliams|Gary Williams]] (gw3@sanger.ac.uk) - ''C. elegans Gene Curation(CDS,Pseudogene,RNA), Sequence_Features, Mass_spec, RGASP''
+
==Mass Spec Data, Transcription Factors==
  
 +
[[User:Gwilliams|Gary Williams]] (gw3@sanger.ac.uk)
  
 +
= '''Nomenclature & Gene Names''' =
  
=Nomenclature & Gene Names=
+
For questions or requests regarding gene names and/or nomenclature, please e-mail: <u>genenames@wormbase.org</u>
  
'''Jonathan Hodgkin''' (jonathan.hodgkin@bioch.ox.ac.uk)
+
'''Jonathan Hodgkin'''
  
 
[[User:Matuli|Mary Ann Tuli]] (mt3@sanger.ac.uk)
 
[[User:Matuli|Mary Ann Tuli]] (mt3@sanger.ac.uk)
Line 68: Line 93:
  
  
=Biological Data Curation=
+
= '''Biological Data Curation''' =
  
 
== '''[http://www.caltech.edu/ California Institute of Technology]'''  ==
 
== '''[http://www.caltech.edu/ California Institute of Technology]'''  ==
Line 96: Line 121:
 
Ranjana Kishore (ranjana@its.caltech.edu)
 
Ranjana Kishore (ranjana@its.caltech.edu)
  
==Anatomy Ontology; Cell Function==
+
==Anatomy Ontology, Cell Function==
  
 
Raymond Lee (raymond@caltech.edu)
 
Raymond Lee (raymond@caltech.edu)
Line 104: Line 129:
 
Cecilia Nakamura (cecilia@tazendra.caltech.edu)
 
Cecilia Nakamura (cecilia@tazendra.caltech.edu)
  
==Picture Curation==
+
==Picture, Expression Pattern Curation==
  
 
Daniela Raciti (draciti@its.caltech.edu)
 
Daniela Raciti (draciti@its.caltech.edu)
  
==Paper; Concise Description==
+
==Paper Curation, Concise Description==
  
 
Kimberly Van Auken (vanauken@caltech.edu)
 
Kimberly Van Auken (vanauken@caltech.edu)
  
==WormBook; Literature Acquisition==
+
==WormBook, Literature Acquisition==
  
 
Daniel Wang (qwang@its.caltech.edu)
 
Daniel Wang (qwang@its.caltech.edu)
  
==Gene_regulation; Interaction; Antibody; Position Matrix==
+
==Gene Regulation, Interaction, Antibody, Position Matrix==
  
 
Xiaodong Wang (xdwang@caltech.edu)
 
Xiaodong Wang (xdwang@caltech.edu)
  
==Transgene; Process Page==
+
==Transgene, Molecule, Phenotype (non-RNAi objects), Process Page==
 +
 
 +
Karen Yook (karen@wormbase.org)
 +
 
 +
==Caltech Mirror==
 +
 
 +
Raymond Lee (raymond@caltech.edu)
 +
 
 +
 
 +
 
 +
= '''Textpresso''' =
 +
 
 +
'''Hans-Michael Mueller''' (mueller@its.caltech.edu)<br>
  
Karen Yook (kyook@its.caltech.edu)
+
Arun Rangarajan (arunr@caltech.edu)<br>
  
 +
Yuling Li (liyuling@caltech.edu)<br>
  
  
=Textpresso:=
 
  
'''Hans-Michael Mueller''' (mueller@its.caltech.edu)
+
= '''GENETICS Journal hyperlink mark-up''' =
  
Arun Rangarajan (arunr@caltech.edu)
+
Arun Rangarajan (arunr@caltech.edu)<br>
  
Yuling Li (liyuling@caltech.edu)
+
Karen Yook (karen@wormbase.org)

Latest revision as of 16:42, 1 August 2011

For help on specific topics, please feel free to e-mail the helpdesk (help@wormbase.org); It may also be helpful to CC your question or request to the individual(s) that are most likely to be the responsible parties. Below is a list of Worm Base staff and their respective areas of expertise.


Principal Investigators

John Spieth (jspieth@watson.wustl.edu) [WashU]

Lincoln Stein (lincoln.stein@gmail.com) [OICR]

Paul Sternberg (pws@caltech.edu) [Caltech]

Paul Kersey [EBI]

Matt Berriman [WTSI]


Web Development Team

Ontario Institute for Cancer Research

Todd Harris (todd@wormbase.org) - Project manager; lead website developer and information architect

Abigail Cabunoc (Abigail.Cabunoc@oicr.on.ca)

Norie de la Cruz (noriedlc3@gmail.com)

Xiaoqi Shi (xiaoqi.shi@oicr.on.ca)


Worm Mart

Ruihua Fang (rfang@caltech.edu)


Sequence Curation

The mailing list to contact all gene structure sequence curators is: seqcur@wormbase.org

Washington University at St. Louis

Tamberlyn Bieri (tbieri@watson.wustl.edu)

Phil Ozersky (pozersky@watson.wustl.edu)

William Nash (wnash@watson.wustl.edu)

Wellcome Trust Sanger Institute

Kevin Howe (klh@sanger.ac.uk) - Team Leader

C. elegans Gene Curation (CDS, Pseudogene, RNA)

Paul Davis (paul.davis@sanger.ac.uk)

Gary Williams (gw3@sanger.ac.uk)

Sequence Features

Paul Davis (paul.davis@sanger.ac.uk)

Gary Williams (gw3@sanger.ac.uk)

Mary Ann Tuli (mt3@sanger.ac.uk)

Operons, Public Sequence Data (EST, OST, RST, mRNA), Transposons

Paul Davis (paul.davis@sanger.ac.uk)

Wellcome/Sanger Mirror, EnsEMBL, Comparative Genomics

Michael Paulini (mh6@sanger.ac.uk)

Strains, Variations

Mary Ann Tuli (mt3@sanger.ac.uk)

Mass Spec Data, Transcription Factors

Gary Williams (gw3@sanger.ac.uk)

Nomenclature & Gene Names

For questions or requests regarding gene names and/or nomenclature, please e-mail: genenames@wormbase.org

Jonathan Hodgkin

Mary Ann Tuli (mt3@sanger.ac.uk)


Biological Data Curation

California Institute of Technology

Postgres Curation Database

Juancarlos Chan (azurebrd@drachma.ugcs.caltech.edu)

Expression Pattern, Microarray, SPELL, citace

Wen Chen (wen@athena.caltech.edu)

Bioinformatics, SVM firstpass

Ruihua Fang (rfang@caltech.edu)

RNAi Curation

Gary Schindelman (garys@caltech.edu)

Chris Grove (cgrove@caltech.edu)

Gene Ontology

Kimberly Van Auken (vanauken@caltech.edu)

Ranjana Kishore (ranjana@its.caltech.edu)

Anatomy Ontology, Cell Function

Raymond Lee (raymond@caltech.edu)

Person Curation

Cecilia Nakamura (cecilia@tazendra.caltech.edu)

Picture, Expression Pattern Curation

Daniela Raciti (draciti@its.caltech.edu)

Paper Curation, Concise Description

Kimberly Van Auken (vanauken@caltech.edu)

WormBook, Literature Acquisition

Daniel Wang (qwang@its.caltech.edu)

Gene Regulation, Interaction, Antibody, Position Matrix

Xiaodong Wang (xdwang@caltech.edu)

Transgene, Molecule, Phenotype (non-RNAi objects), Process Page

Karen Yook (karen@wormbase.org)

Caltech Mirror

Raymond Lee (raymond@caltech.edu)


Textpresso

Hans-Michael Mueller (mueller@its.caltech.edu)

Arun Rangarajan (arunr@caltech.edu)

Yuling Li (liyuling@caltech.edu)


GENETICS Journal hyperlink mark-up

Arun Rangarajan (arunr@caltech.edu)

Karen Yook (karen@wormbase.org)