Difference between revisions of "Getting Papers into WormBase"
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Jump to navigationJump to search (New page: From Kimberly: *This is how I've been uploading papers as of ~February 2009: **Every day, I go to [http://www.ncbi.nlm.nih.gov/pubmed/ PubMed] and perform a search using the keyword elega...) |
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*This is how I've been uploading papers as of ~February 2009: | *This is how I've been uploading papers as of ~February 2009: | ||
− | **Every day, | + | **Every day, an automated script accesses [http://www.ncbi.nlm.nih.gov/pubmed/ PubMed] to perform a search using the keyword elegans. |
+ | **The results of this search are presented in the [http://tazendra.caltech.edu/~postgres/cgi-bin/wbpaper_editor.cgi wbpaper_editor.cgi]. | ||
+ | **To enter new papers, select your name from the curator list, scroll down to the bottom of the page, and click on the link that says, 'Enter New Papers!' | ||
+ | **The New Papers page lists the PMID and abstract for each of the returned papers. Alongside each of the abstracts is a radio button where a curator can elect to accept or reject the paper. | ||
+ | **Papers that are accepted will be subsequently processed and receive a WBPaper ID. | ||
+ | **The PMIDs for rejected papers are stored in a file (/home/postgres/work/pgpopulation/wpa_papers/pmid_downloads/rejected_pmids) to be used as a negative training set for machine learning approaches to paper identification (triage). | ||
+ | |||
+ | *Papers that I accept: |
Revision as of 14:35, 20 May 2009
From Kimberly:
- This is how I've been uploading papers as of ~February 2009:
- Every day, an automated script accesses PubMed to perform a search using the keyword elegans.
- The results of this search are presented in the wbpaper_editor.cgi.
- To enter new papers, select your name from the curator list, scroll down to the bottom of the page, and click on the link that says, 'Enter New Papers!'
- The New Papers page lists the PMID and abstract for each of the returned papers. Alongside each of the abstracts is a radio button where a curator can elect to accept or reject the paper.
- Papers that are accepted will be subsequently processed and receive a WBPaper ID.
- The PMIDs for rejected papers are stored in a file (/home/postgres/work/pgpopulation/wpa_papers/pmid_downloads/rejected_pmids) to be used as a negative training set for machine learning approaches to paper identification (triage).
- Papers that I accept: