Difference between revisions of "Genetics Markup by Textpresso and First Pass"
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[[http://www.wormbase.org/wiki/index.php/How_to_FirstPass back]] | [[http://www.wormbase.org/wiki/index.php/How_to_FirstPass back]] | ||
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| − | =[[Instructions for Genetics]]= | + | ==Journal first-pass form (jfp) : GENETICS papers only== |
| + | This is not a postgres table but is a form that collects extra data from Genetics authors, which is then stored in our author first pass table (afp). | ||
| + | |||
| + | The form URL is generated by Genetics through the doi ticket form. | ||
| + | |||
| + | The purpose of the genetics first pass form is to collect data objects that do not exist in WB already so that Arun can mark-up the Genetics paper and provide links for these objects.<br> | ||
| + | |||
| + | Objects are collected for the following data types: | ||
| + | *genesymbol | ||
| + | *extvariation | ||
| + | *newstrains | ||
| + | *newbalancers | ||
| + | *antibody | ||
| + | *transgene | ||
| + | *newsnp | ||
| + | *newcell | ||
| + | |||
| + | All of these fields, except genesymbol, do not show on the normal afp_form. We opted to make a hybrid of the afp_form for the Genetics authors so that they would not be requested to fill out another WB generated form for us after their paper was published and because we needed this extra information from them asap. | ||
| + | |||
| + | It is also my understanding that these authors would be required to fill out the form as part of the publication process, so this was an opportunity to have 100% author feedback for paper flagging. | ||
| + | |||
| + | The pipeline for alerting data curators from this table still needs to be worked out, right now it is dealt with manually. | ||
| + | |||
| + | |||
| + | ==[[Instructions for Genetics]]== | ||
[http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/journal/journal_first_pass.cgi?action=Curate&paper=00000001&passwd=1241223658.1418967 Sample GENETICS Firstpass form] | [http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/journal/journal_first_pass.cgi?action=Curate&paper=00000001&passwd=1241223658.1418967 Sample GENETICS Firstpass form] | ||
Revision as of 13:46, 24 September 2009
[back]
Journal first-pass form (jfp) : GENETICS papers only
This is not a postgres table but is a form that collects extra data from Genetics authors, which is then stored in our author first pass table (afp).
The form URL is generated by Genetics through the doi ticket form.
The purpose of the genetics first pass form is to collect data objects that do not exist in WB already so that Arun can mark-up the Genetics paper and provide links for these objects.
Objects are collected for the following data types:
- genesymbol
- extvariation
- newstrains
- newbalancers
- antibody
- transgene
- newsnp
- newcell
All of these fields, except genesymbol, do not show on the normal afp_form. We opted to make a hybrid of the afp_form for the Genetics authors so that they would not be requested to fill out another WB generated form for us after their paper was published and because we needed this extra information from them asap.
It is also my understanding that these authors would be required to fill out the form as part of the publication process, so this was an opportunity to have 100% author feedback for paper flagging.
The pipeline for alerting data curators from this table still needs to be worked out, right now it is dealt with manually.
