Difference between revisions of "General specifications"
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''Arabidopsis'': /data2/data-processing/data/arabidopsis/Data/processedfiles/title/ /data2/data-processing/data/arabidopsis/Data/processedfiles/abstract/ | ''Arabidopsis'': /data2/data-processing/data/arabidopsis/Data/processedfiles/title/ /data2/data-processing/data/arabidopsis/Data/processedfiles/abstract/ | ||
| + | |||
source files for curatable sentences - supplied by Textpresso team | source files for curatable sentences - supplied by Textpresso team | ||
| + | |||
gene name to gene identifier mapping file | gene name to gene identifier mapping file | ||
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'''Curation''' | '''Curation''' | ||
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web-based curation form | web-based curation form | ||
''Arabidopsis'': http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/tair/tair_ccc.cg | ''Arabidopsis'': http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/tair/tair_ccc.cg | ||
| + | |||
postgres table for storing curation | postgres table for storing curation | ||
| Line 27: | Line 31: | ||
'''Output - three-column or GAF''' | '''Output - three-column or GAF''' | ||
| + | |||
gene name to gene identifier mapping file | gene name to gene identifier mapping file | ||
''Arabidopsis'': /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles | ''Arabidopsis'': /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles | ||
| + | |||
taxon ID | taxon ID | ||
''Arabidopsis'': | ''Arabidopsis'': | ||
Revision as of 18:36, 17 November 2011
General specifications for Textpresso-based CCC Curation
Input
location of files on Textpresso for retrieving paper titles and abstracts
Arabidopsis: /data2/data-processing/data/arabidopsis/Data/processedfiles/title/ /data2/data-processing/data/arabidopsis/Data/processedfiles/abstract/
source files for curatable sentences - supplied by Textpresso team
gene name to gene identifier mapping file
Arabidopsis: /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles
Curation
web-based curation form
Arabidopsis: http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/tair/tair_ccc.cg
postgres table for storing curation
Arabidopsis: ccc_tair_gene_comp_go
Output - three-column or GAF
gene name to gene identifier mapping file
Arabidopsis: /home/acedb/kimberly/ccc_tair/tair_ccc_datafiles
taxon ID
Arabidopsis:
