Difference between revisions of "Gene Page"
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Jump to navigationJump to searchLine 35: | Line 35: | ||
Microarray results -> Microarray Spot ID(?) | Microarray results -> Microarray Spot ID(?) | ||
Move topology Map right below Expression cluster | Move topology Map right below Expression cluster | ||
+ | via Anatomy_function -> Experiments in table column headers | ||
+ | General cleanup | ||
* Gene Ontology | * Gene Ontology | ||
Line 57: | Line 59: | ||
-- Action Items: Put data in table | -- Action Items: Put data in table | ||
+ | Evaluate other tools for graphic viewing (long term) | ||
+ | |||
+ | * Phenotype | ||
+ | |||
+ | -- Action Item: Collapse not observed: especially RNAi; | ||
+ | emphasize NOT in label; | ||
+ | use term "perturbations" rather than "mutation" for RNAi | ||
+ | move to WB2 data tables; move Phenotype column in RNAi to first | ||
+ | |||
+ | * Reagents | ||
+ | |||
+ | -- Sage & Matching cDNAs: toggle list? | ||
+ | -- Action Item: clean up empty fields | ||
+ | Relabel Microarray probes -> Microarray oligo sets | ||
+ | Remove "Found" in data lines (through out site). | ||
+ | Move cDNA and Antibody up. | ||
+ | Group primer pairs and oligos | ||
+ | |||
+ | * References | ||
+ | |||
+ | -- Working to separate via categories | ||
+ | -- Export citations? -- Not yet | ||
+ | |||
+ | * Sequences | ||
+ | |||
+ | -- Need comments from Hinxton | ||
+ | -- Action Items: Rearrange table to reflect Central Dogma | ||
+ | Caltech to make other sequences descriptions |
Revision as of 18:10, 14 February 2011
Meeting minutes, Gene Page review:
- Overview
-- Keep WormBase ID -- From ce 1 and 2 -- move to history? references? -- Provisional description -- legacy -- Floating Box, how to link to protein info? -- Action Items: ce 1 and 2 -> Make sure citations are expanded. History for now. Kimberly and Ranjana 2 look into proper placement of provisional description. Make Sequence Widget appear on clicking sequence link in floating box.
- Location
-- explicitly note a genomic position -- call genomic view? -- Action Item: Name with something more descriptive
- History
-- actually curation history; unclear what it is. -- rename as database history? check presentation options on sidebar listing -- call Database history? -- Try first -- selective viewing; details to curators only?
- Expression
-- Tissues with color has expression (color standard representation in WormAtlas). -- Descriptive statements needed - TH -- List anatomy terms associated with the expression; -- Action Items: Chris to provide legend for color/tissue correspondence. Work on "conservative" and "liberal" info representation Move chronogram further down. Provide tooltip for expression cluster link; Wen to provide description. Microarray results -> Microarray Spot ID(?) Move topology Map right below Expression cluster via Anatomy_function -> Experiments in table column headers General cleanup
- Gene Ontology
-- Simplify info representation; focus on term less the method -- Make into sortable table? -- Action Items: Look into GO details page for ideas for rendering table; See SGDs
- Genetics
-- Pretty straight forward -- Action Items: Move strains to the top.
- Homology
-- Need feedback from Hinxton (left). -- Protein domains - used to be part of function; should it be there? -- Action Item: Move Protein Domains to the bottom.
- Interaction
-- Action Items: Put data in table Evaluate other tools for graphic viewing (long term)
- Phenotype
-- Action Item: Collapse not observed: especially RNAi; emphasize NOT in label; use term "perturbations" rather than "mutation" for RNAi move to WB2 data tables; move Phenotype column in RNAi to first
- Reagents
-- Sage & Matching cDNAs: toggle list? -- Action Item: clean up empty fields Relabel Microarray probes -> Microarray oligo sets Remove "Found" in data lines (through out site). Move cDNA and Antibody up. Group primer pairs and oligos
- References
-- Working to separate via categories -- Export citations? -- Not yet
- Sequences
-- Need comments from Hinxton -- Action Items: Rearrange table to reflect Central Dogma Caltech to make other sequences descriptions