Difference between revisions of "Gene Ontology"

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Gene Ontology curation at WormBase is performed through several different pipelines:
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'''Gene Ontology''' curation at WormBase is performed through several different pipelines:
  
 
1. Manual curation of the literature
 
1. Manual curation of the literature

Revision as of 16:29, 20 November 2009

Gene Ontology curation at WormBase is performed through several different pipelines:

1. Manual curation of the literature

2. Semi-automated, Textpresso-based curation of Cellular Component and Molecular Function

3. Phenotype2GO mappings for Biological Process curation (both VariationPhenotype2GO and RNAiPhenotype2GO)

4. InterPro2GO mappings for sequence-based IEA annotations

5. Reference Genome inferential annotations

Semi-automated curation

  • CCC - GO Cellular Component Curation using Textpresso
  1. dictyBase
  2. FlyBase
  3. TAIR
  4. WormBase
  • MFC - GO Molecular Function Curation using Textpresso

Phenotype2GO pipeline


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