Difference between revisions of "Gene Ontology"

From WormBaseWiki
Jump to navigationJump to search
Line 2: Line 2:
  
 
1. Manual curation of the literature
 
1. Manual curation of the literature
 +
 
2. Semi-automated, Textpresso-based curation of Cellular Component and Molecular Function
 
2. Semi-automated, Textpresso-based curation of Cellular Component and Molecular Function
 +
 
3. Phenotype2GO mappings for Biological Process curation (both VariationPhenotype2GO and RNAiPhenotype2GO)
 
3. Phenotype2GO mappings for Biological Process curation (both VariationPhenotype2GO and RNAiPhenotype2GO)
 +
 
4. InterPro2GO mappings for sequence-based IEA annotations
 
4. InterPro2GO mappings for sequence-based IEA annotations
 +
 
5. Reference Genome inferential annotations
 
5. Reference Genome inferential annotations
  

Revision as of 16:27, 20 November 2009

Gene Ontology curation at WormBase is performed through several different pipelines:

1. Manual curation of the literature

2. Semi-automated, Textpresso-based curation of Cellular Component and Molecular Function

3. Phenotype2GO mappings for Biological Process curation (both VariationPhenotype2GO and RNAiPhenotype2GO)

4. InterPro2GO mappings for sequence-based IEA annotations

5. Reference Genome inferential annotations

Semi-automated curation

  • CCC - GO Cellular Component Curation using Textpresso
  1. dictyBase
  2. FlyBase
  3. TAIR
  4. WormBase
  • MFC - GO Molecular Function Curation using Textpresso

Phenotype2GO pipeline


Back to Caltech documentation