Difference between revisions of "Gene Ontology"

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== Semi-automation of curation ==
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Gene Ontology curation at WormBase is performed through several different pipelines:
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1. Manual curation of the literature
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2. Semi-automated, Textpresso-based curation of Cellular Component and Molecular Function
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3. Phenotype2GO mappings for Biological Process curation (both VariationPhenotype2GO and RNAiPhenotype2GO)
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4. InterPro2GO mappings for sequence-based IEA annotations
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5. Reference Genome inferential annotations
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== Semi-automated curation ==
 
*CCC - GO Cellular Component Curation using Textpresso
 
*CCC - GO Cellular Component Curation using Textpresso
 
#[[dictyBase]]
 
#[[dictyBase]]
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#[[TAIR]]
 
#[[TAIR]]
 
#[[WormBase]]
 
#[[WormBase]]
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*MFC - GO Molecular Function Curation using Textpresso
  
 
== Phenotype2GO pipeline ==
 
== Phenotype2GO pipeline ==

Revision as of 16:26, 20 November 2009

Gene Ontology curation at WormBase is performed through several different pipelines:

1. Manual curation of the literature 2. Semi-automated, Textpresso-based curation of Cellular Component and Molecular Function 3. Phenotype2GO mappings for Biological Process curation (both VariationPhenotype2GO and RNAiPhenotype2GO) 4. InterPro2GO mappings for sequence-based IEA annotations 5. Reference Genome inferential annotations

Semi-automated curation

  • CCC - GO Cellular Component Curation using Textpresso
  1. dictyBase
  2. FlyBase
  3. TAIR
  4. WormBase
  • MFC - GO Molecular Function Curation using Textpresso

Phenotype2GO pipeline


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