Gene Expression micropublications
motivation
generate a user's submission form for reporter expression data containing enough information so that the experiment can be interpreted and/or repeated by others.
form
http://mangolassi.caltech.edu/~azurebrd/cgi-bin/forms/micropub.cgi
instructions for the form
uP data will be displayed under a separate section on the gene expression page i.e. between Anatomical expression patterns and expression profiling graphs
they will be automatically assigned a tag i.e. uP
Submission form should have
- Image -> we should allow an upload your image button
- Gene -> autocomplete on genes required field
- Pattern Description -> free text required field
- Expressed in tissue/cell-> autocomplete on anatomy terms
Toggle certain toggle partial toggle uncertain (one of the 3 should be toggled if field 3 has info)
- Expressed during -> Autocomplete on Life stages
- Expressed in organelle -> autocomplete on GO CC
3 or 5 -> one of them should contain info -> required
- Construct used -> autocomplete on transgenes
and -> sequence, reporter, clone
on of the 2 should be filled
- non elegans? -> Select your species dropdown on species
Name for the expression pattern -> we can call it Micropub0000001 instead of Expr00001 -> Autogenerated Can we see Wobr tree in term info? so users can navigate the tree if they need to
