Gene - GO Curation Status

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Specifications for Gene - GO Curation Status Form

  • Specifications for a weekly script to generate a webpage that lists which C. elegans protein-coding genes do not have one or more aspects (BP, MF, CC) of GO curation.

Input Files

Output

  • A web page that lists genes that do not have annotation for one or more aspects of GO.
  • The page will be sectioned according to BP, MF, and CC.
  • There would be links at the top of the page to each section (since the page could be long).
  • Each section will have two columns:
    • The value in gin_locus_name and the WBGene id
    • The number of references in postgres that are Type:Journal_article and list that gene in pap_gene
      • 7
      • the number in the reference column would link to a page listing the matching papers that are, in turn, linked to their page in the paper editor
      • this is the same as the results of performing a gene search in the paper editor: SELECT joinkey, pap_gene FROM pap_gene WHERE pap_gene = '00014200'

Script Details