Difference between revisions of "Gene-Paper Associations"
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# The primary pipeline '''right now''' is a Perl script that automatically associates genes and proteins mentioned in paper and meeting abstracts with the paper object in postgres. Note that the script was only recently updated (October 2009) to eliminate case sensitivity so that proteins would be recognized and the corresponding gene connections appropriately made. Juancarlos has run the case-insensitive version of the script on all past abstracts which generated 7552 possible new associations. After spot checking some of these, we anticipate that these new associations will be added to postgres. | # The primary pipeline '''right now''' is a Perl script that automatically associates genes and proteins mentioned in paper and meeting abstracts with the paper object in postgres. Note that the script was only recently updated (October 2009) to eliminate case sensitivity so that proteins would be recognized and the corresponding gene connections appropriately made. Juancarlos has run the case-insensitive version of the script on all past abstracts which generated 7552 possible new associations. After spot checking some of these, we anticipate that these new associations will be added to postgres. | ||
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Revision as of 13:33, 24 November 2009
We have several options for making gene-paper associations:
- The primary pipeline right now is a Perl script that automatically associates genes and proteins mentioned in paper and meeting abstracts with the paper object in postgres. Note that the script was only recently updated (October 2009) to eliminate case sensitivity so that proteins would be recognized and the corresponding gene connections appropriately made. Juancarlos has run the case-insensitive version of the script on all past abstracts which generated 7552 possible new associations. After spot checking some of these, we anticipate that these new associations will be added to postgres.
Back to Caltech documentation
