GSA-GO Linking Summary Tables

Links by GSA Paper ID

110338

GSA Paper ID	Linked Term in Abstract	Linked Term in GO	Instance in Abstract	Synonym match, if applicable	Ontology Aspect (P, F, C)	Larger Phrase in Abstract, if applicable	Best Possible GO Link, if different	Assessment of Existing Link (Y, N, G(ray area))	Comments	Other Actions
110338	male meiosis	GO:0007140 male meiosis	1		P			Y(kv)	missed GO:0007143 female meiosis (kv)
110338	chromosome segregation	GO:0007059 chromosome segregation	1		P	sex chromosome segregation	GO:0016321 female meiosis chromosome segregation, GO:0007060 male meiosis chromosome segregation	Y(kv)	Can we link out to more than one term? (kv)	Ontology development? (kv)
110338	prophase	GO:0051324 prophase	1		P	meiotic prophase	GO:0007128 meiotic prophase I, GO:0007136 meiotic prophase II	Y(kv)	Not clear which meiotic prophase the authors mean and there is no general term for meiotic prophase. (kv)	Add meiotic prophase to GO? (kv)
110338	apoptosis	GO:0006915 apoptosis	1		P	germ-line apoptosis		Y(kv)		Ontology development? - germline vs somatic, if mechanism is different (kv)
110338	signaling	GO:0023052 signaling	1		P	checkpoint signaling	GO:0072411 signal transduction involved in meiotic cell cycle checkpoint	Y(kv)	Maybe even GO:0072461 response to meiotic recombination checkpoint signal
110338	oogenesis	GO:0048477 oogenesis	1		P			Y(kv)
110338	spermatogenesis	GO:0007283 spermatogenesis	1		P			Y(kv)
110338	oogenesis	GO:0048477 oogenesis	2		P			Y(kv)
110338	X chromosome	GO:0000805 X chromosome	1		C			Y(kv)
110338	X chromosome	GO:0000805 X chromosome	2		C			Y(kv)
110338	synapsis	GO:0007129 synapsis	1		P	self-synapsis		Y(kv)		Broaden GO definition? (kv)
110338	apoptosis	GO:0006915 apoptosis	1		P			Y(kv)
110338	chromatin	GO:0000785 chromatin	1		C		GO:0000790 nuclear chromatin	Y(kv)
110338	gene expression	GO:0010467 gene expression	1		P	X-linked gene expression	GO:0009299 mRNA transcription	Y(kv)
110338	chromatin	GO:0000785 chromatin	2		C		GO:0000790 nuclear chromatin	Y(kv)
110338	signaling	GO:0023052 signaling	2		P	checkpoint signaling	GO:0072411 signal transduction involved in meiotic cell cycle checkpoint	Y(kv)	Maybe even GO:0072461 response to meiotic recombination checkpoint signal

123323

GSA Paper ID	Linked Term in Abstract	Linked Term in GO	Instance in Abstract	Synonym match, if applicable	Ontology Aspect (P, F, C)	Larger Phrase in Abstract, if applicable	Best Possible GO Link, if different	Assessment of Existing Link (Y, N, G(ray area))	Comments	Other Actions
123323	diapause	GO:0030431 sleep	1	related synonym	P	entry in the facultative dauer diapause stage	GO:0043053 dauer entry	N(kv)
123323	signaling	GO:0023052 signaling	1		P	DAF-2/Insulin receptor (InsR) signaling	GO:0008286 insulin receptor signaling pathway	Y(kv)	Maybe even GO:0035558 phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling
123323	regulation	GO:0065007 biological regulation	1	broad synonym	P	developmental and physiological regulation events	GO:0050793 regulation of developmental process, GO:0050789 regulation of biological process	Y(kv)	regulation of physiological process is an exact synonym for regulation of biological process
123323	signaling	GO:0023052 signaling	2		P	DAF-16/FOXO-dependent branch of the insulin-like signaling	GO:0008286 insulin receptor signaling pathway	Y(kv)	Maybe even GO:0035558 phosphatidylinositol 3-kinase cascade involved in insulin receptor signaling
123323	formation	GO:0009058 biosynthetic process	1	exact synonym	P	dauer formation	GO:0043053 dauer entry	N(kv)
123323	insulin-like growth factor	GO:0005159 insulin-like growth factor receptor binding	1	narrow synonym	F	insulin/insulin-like growth factor (IGF)		Y(kv)

123992

GSA Paper ID	Linked Term in Abstract	Linked Term in GO	Instance in Abstract	Synonym match, if applicable	Ontology Aspect (P, F, C)	Larger Phrase in Abstract, if applicable	Best Possible GO Link, if different	Assessment of Existing Link (Y, N, G(ray area))	Comments	Other Actions
123992	cell	GO:0005623 cell	1		C	L3 cell fates		Y(kv)	Link out to life stage for 'L3'? Also, see below.
123992	cell	GO:0005623 cell	2		C	L3 cell fate		Y(kv)	Link out to life stage for 'L3'? Also, see below.
123992	formation	GO:0009058 biosynthetic process	1	exact synonym	P	dauer larva formation	GO:0043053 dauer entry or GO:0040024 dauer larval development	N(kv)
123992	formation	GO:0009058 biosynthetic process	2	exact synonym	P	dauer formation decision	GO:0043053 dauer entry	N(kv))
123992	cell	GO:0005623 cell	3		C	regulate stage-specific cell fate decisions		Y(kv)	This link is not incorrect, but like above, 'cell' in this context is part of a larger concept of cell fate specification. There is a GO term, GO:0001708 cell fate specification. Would it be appropriate to link that term instead?
123992	formation	GO:0009058 biosynthetic process	3	exact synonym	P	regulate dauer formation	GO:0043053 dauer entry	N(kv)		Need a new regulation term in GO for dauer entry?

128389

GSA Paper ID	Linked Term in Abstract	Linked Term in GO	Instance in Abstract	Synonym match, if applicable	Ontology Aspect (P, F, C)	Larger Phrase in Abstract, if applicable	Best Possible GO Link, if different	Assessment of Existing Link (Y, N, G(ray area))	Comments	Other Actions
128389	ligand	GO:0005488 binding	1	narrow synonym	F		GO:0005102 receptor binding or GO:0005112 Notch binding	Y(kv)