GFF source methods

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Revision as of 09:38, 21 April 2009 by Arogers (talk | contribs) (New page: == GFF source and feature == [http://www.sanger.ac.uk/Software/formats/GFF/ GFF2 description at the Sanger Institute] In the WormBase GFF files genes are represented in several ways each...)
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GFF source and feature

GFF2 description at the Sanger Institute

In the WormBase GFF files genes are represented in several ways each specified by a different source and feature (second and third columns)

Gene spans

This is the largest extent of a genes' transcripts from the begining of the most 5' transcripts 5' UTR to the end of the most 3' transcripts 3' UTR. Each gene is represented as a single line.

source = gene; feature = gene.

eg cyk in WormBase CHROMOSOME_III gene gene 13768424 13771124 . - . Gene WBGene00000875" ; Position "21.5305" ; Locus "cyk-4"