Difference between revisions of "GFF Release Data and Changes"

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(Started a summary page for tracking data format changes.)
 
(Added overview of which datasets contain bioproject IDs as part of their landmark.)
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WS238
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= WS238 =
  
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Table name format: '''genus-initial'''_''species''_''bioproject-id''_''release''
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Table name format: ''genus-initial''_''species''_''bioproject-id''_''release''
 +
 
 +
Example: a_suum_PRJNA62057_WS238
  
 
{| class="wikitable"
 
{| class="wikitable"
 
|-
 
|-
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! Table !! Data Format !! Landmark Format Example !!
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! Table !! Data Format !! Landmark Includes Bioproject ID !!
 
|-
 
|-
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| a_suum_PRJNA62057_WS238 || GFF3 || As_PRJNA80881_Scaffold122
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| a_suum_PRJNA62057_WS238 || GFF3 || no
 
|-
 
|-
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| a_suum_PRJNA80881_WS238 || GFF3 ||
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| a_suum_PRJNA80881_WS238 || GFF3 || yes (e.g., As_PRJNA80881_Scaffold122)
 
|-
 
|-
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| b_malayi_PRJNA10729_WS238 || GFF2 ||
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| b_malayi_PRJNA10729_WS238 || GFF2 || ?
 
|-
 
|-
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| b_xylophilus_PRJEA64437_WS238 || GFF3 ||
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| b_xylophilus_PRJEA64437_WS238 || GFF3 || no
 
|-
 
|-
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| c_angaria_PRJNA51225_WS238 || GFF3 ||
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| c_angaria_PRJNA51225_WS238 || GFF3 || no
 
|-
 
|-
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| c_brenneri_PRJNA20035_WS238 || GFF2 ||
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| c_brenneri_PRJNA20035_WS238 || GFF2 || ?
 
|-
 
|-
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| c_briggsae_PRJNA10731_WS238 || GFF2 ||
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| c_briggsae_PRJNA10731_WS238 || GFF2 || ?
 
|-
 
|-
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| c_elegans_PRJNA13758_WS238 || GFF2 ||
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| c_elegans_PRJNA13758_WS238 || GFF2 || ?
 
|-
 
|-
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| c_japonica_PRJNA12591_WS238 || GFF2 ||
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| c_japonica_PRJNA12591_WS238 || GFF2 || ?
 
|-
 
|-
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| c_remanei_PRJNA53967_WS238 || GFF2 ||
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| c_remanei_PRJNA53967_WS238 || GFF2 || ?
 
|-
 
|-
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| c_sp11_PRJNA53597_WS238 || GFF3 ||
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| c_sp11_PRJNA53597_WS238 || GFF3 || no
 
|-
 
|-
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| c_sp5_PRJNA194557_WS238 || GFF3 ||
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| c_sp5_PRJNA194557_WS238 || GFF3 || no
 
|-
 
|-
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| h_bacteriophora_PRJNA13977_WS238 || GFF3 ||
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| h_bacteriophora_PRJNA13977_WS238 || GFF3 || no
 
|-
 
|-
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| h_contortus_PRJEB506_WS238 || GFF3 ||
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| h_contortus_PRJEB506_WS238 || GFF3 || no
 
|-
 
|-
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| l_loa_PRJNA60051_WS238 || GFF3 ||
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| l_loa_PRJNA60051_WS238 || GFF3 || no
 
|-
 
|-
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| m_hapla_PRJNA29083_WS238 || GFF3 ||
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| m_hapla_PRJNA29083_WS238 || GFF3 || no
 
|-
 
|-
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| m_incognita_PRJEA28837_WS238 || GFF3 ||
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| m_incognita_PRJEA28837_WS238 || GFF3 || no
 
|-
 
|-
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| p_pacificus_PRJNA12644_WS238 || GFF2 ||
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| p_pacificus_PRJNA12644_WS238 || GFF2 || ?
 
|-
 
|-
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| s_ratti_PRJEA62033_WS238 || GFF3 ||
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| s_ratti_PRJEA62033_WS238 || GFF3 || no
 
|-
 
|-
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| t_spiralis_PRJNA12603_WS238 || GFF3 ||
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| t_spiralis_PRJNA12603_WS238 || GFF3 || no
 
|}
 
|}

Revision as of 14:15, 29 May 2013

WS238

Table name format: genus-initial_species_bioproject-id_release

Example: a_suum_PRJNA62057_WS238

Table Data Format Landmark Includes Bioproject ID
a_suum_PRJNA62057_WS238 GFF3 no
a_suum_PRJNA80881_WS238 GFF3 yes (e.g., As_PRJNA80881_Scaffold122)
b_malayi_PRJNA10729_WS238 GFF2 ?
b_xylophilus_PRJEA64437_WS238 GFF3 no
c_angaria_PRJNA51225_WS238 GFF3 no
c_brenneri_PRJNA20035_WS238 GFF2 ?
c_briggsae_PRJNA10731_WS238 GFF2 ?
c_elegans_PRJNA13758_WS238 GFF2 ?
c_japonica_PRJNA12591_WS238 GFF2 ?
c_remanei_PRJNA53967_WS238 GFF2 ?
c_sp11_PRJNA53597_WS238 GFF3 no
c_sp5_PRJNA194557_WS238 GFF3 no
h_bacteriophora_PRJNA13977_WS238 GFF3 no
h_contortus_PRJEB506_WS238 GFF3 no
l_loa_PRJNA60051_WS238 GFF3 no
m_hapla_PRJNA29083_WS238 GFF3 no
m_incognita_PRJEA28837_WS238 GFF3 no
p_pacificus_PRJNA12644_WS238 GFF2 ?
s_ratti_PRJEA62033_WS238 GFF3 no
t_spiralis_PRJNA12603_WS238 GFF3 no
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