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| − | This is the official wiki site for [http://www.wormbase.org WormBase], the database of the model organism [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans] and related nematodes. WormBase is developed by an [[WormBase Consortium|international consortium]] of researchers and computer scientists.
| + | Here are some formatting tips for those wishing to edit the WormBase Wiki content. If you are logged in as a WormBase Wiki user, try clicking on the "edit" tab at the top of this page and take a look at the different formatting options for generating or editing your own page of interest. |
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| − | To edit this Wiki, please create an account (click on the 'log in/create account' link at the top of the page). Before contributing, please see the [[Wiki objectives and usage guidelines|WormBaseWiki usage guidelines]].
| + | Here's a [http://www.mediawiki.org/wiki/Help:Formatting link] to Media Wiki's formatting help page, which is very useful. |
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| − | == Header ==
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| − | *[[Main_Page| Text linking you to the WormBase Wiki Home Page]]
| + | Note: The Table of Contents below automatically appears if you have 4 or more Headers on a page. |
| − | *Bullet
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| | + | = Header 1 = |
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| − | == Community Resources ==
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| − | *[http://www.wormbase.org/db/misc/laboratory?name=%2A;class=laboratory C. elegans laboratories]
| + | == Header 2 == |
| − | *[[Meetings|Meetings]]
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| − | *[http://www.wormbase.org/forums/ Worm Community Discussion Forum] ([http://www.wormbase.org/forums/ Job postings])
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| − | *[[Software for nematode research|Software for nematode research]]
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| − | *[[Related web resources|Related web resources]]
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| − | *[[NGASP|NGASP]]
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| | | | |
| − | === Reagents and Protocols ===
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| − | *[[Strains|Strains]]
| + | === Header 3 === |
| − | *[[Reagents|Reagents]] - ''Useful reagents from third-party sources''
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| − | *[[Cosmids/YACs|Cosmids/YACs]]
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| − | *[[Fosmids|Fosmids]]
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| − | * Experimental protocols: [http://www.wormbook.org/toc_wormmethods.html WormMethods @ WormBook] | [http://www.wormbase.org/forums/ Worm Community Forum]
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| | | | |
| − | === Microarray Data ===
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| − | *[http://smd.stanford.edu/search.shtml Stanford Microarray Database (SMD) search page]
| + | ==== Header 4 ==== |
| − | *[http://smd.stanford.edu/cgi-bin/search/nameSearch.pl SMD gene-centric search page]
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| − | *[http://smd.stanford.edu/cgi-bin/publication/viewPublication.pl?pub_no=91 Jiang et al. (2001), PNAS 98, 218-223] (SMD data from Kim laboratory's 2001 microarray paper)
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| − | *[ftp://smd-ftp.stanford.edu/smd/publications/91/ SMD's FTP site]
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| − | *[[SPELL|''SPELL'']]
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| − | == Using WormBase ==
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| − | *[[Site Map|Site Map]]
| + | [[Main_Page| An internal link to the Wiki Main Page]] |
| − | *[[Mirror sites and frozen releases|Mirror sites and frozen releases]]
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| − | User Guides
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| − | *[[User Guide|Official User Guide]] -- ''Usage, FAQs, Glossary of terms''
| + | [http://www.wormbase.org An external link to WormBase.org] |
| − | *[[Data mining|Data mining]] - ''Learn about the methods for mining WormBase systematically''
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| − | *[[Searching WormBase for Information About C. elegans (Wiley)|Searching WormBase for Information About C. elegans (Wiley)]]
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| − | *[[Downloads|Downloads]] - ''Download commonly requested files and datasets'' | + | * Bullet Point |
| − | *[[Guidelines for Users on Submitting/Reporting Data to WormBase|Submitting data and reporting errors]]
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| − | General Information
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| − | *[[Release Schedule|Release Schedule]] - ''When to expect the next release of WormBase, and information on past releases''
| + | ''Italics'' |
| − | *[[Citing WormBase|Citing WormBase]]
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| − | *[[Presentations|Presentations]] | [[Publications|Publications]] - ''public information presented by the developers of WormBase''
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| − | *[[Local installation of WormBase|Installng WormBase on your own computer]]
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| − | *[[Editorial policy|Editorial policy]] - ''WormBase editorial policy''
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| − | *[[Acceptable use policy|Acceptable use policy]]
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| − | *[[WormBaseWiki:Copyrights|Copyright statement]]
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| − | *[[Acceptable use policy#Privacy statement|Privacy statement]]
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| | | | |
| − | == Staying up-to-date ==
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| − | [http://www.wormbase.org WormBase] offers a number of ways to stay up-to-date with new features and datasets, to make feature requests, and to ask for assistance with the database.
| + | '''BOLD''' |
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| − | * Live Help Desk: [http://friendfeed.com/rooms/wormbase The WormBase Room on FriendFeed]
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| − | * Twitter: [http://www.twitter.com/wormbase Status updates], [http://www.twitter.com/wormbase_commit Software commit messages]
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| − | * Mailing Lists: [[Mailing lists#help|General questions]] | [[Mailing lists#developers|Developers]] -- [[Mailing lists|More...]]
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| − | * RSS Feeds: [http://www.wormbase.org/rss/wormbase-live.xml News and Status] | [http://www.wormbase.org/rss/wormbase-dev.xml Development News] -- [[RSS news feeds|More Info]]
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| − | *[[WormBase Newsletters|WormBase Newsletters]]
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| − | *[http://www.wormbook.org/announce.html WormBook Announcements] - ''low volume''
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| | | | |
| − | == Internal Documentation ==
| + | '''''Italics & BOLD''''' |
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| − | *[[WormBase Staff Resources]] -- ''A guide to the tools available for WormBase staff''
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| − | *[[Developer documentation|Developer documentation]]
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| | + | <nowiki> Formatting '''Escape''' </nowiki> |
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| | + | ---- |
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| − | *[[Caltech documentation]]
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| − | *[[Working Groups|Working Groups]]
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| | [[Category:User Guide]] | | [[Category:User Guide]] |
| − | [[Category:Developer documentation]]
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| − | [[Category:WikiMainPage]]
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| − | [[Category:Meetings]]
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| − | [[Category:Curation]]
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