Difference between revisions of "FlyBase"

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(New page: '''11/20/09''' FlyBase GO_cur flag Back to Gene Ontology)
 
 
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'''11/20/09''' FlyBase GO_cur flag
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===GO Curation Pipeline at FlyBase===
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==Textpresso for Cellular Component Curation for FlyBase==
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Basic outline: use FlyBase gene association file to sort search results based upon presence/absence in GAF and presence/absence of CC annotation
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May also search using a priority gene list
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==History==
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    Incoming papers are flagged as having ''new'' or ''comprehensive'' GO data.  It's, therefore, not easy to identify 
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    previously curated papers that would be classed as such for an SVM.
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'''11/20/09''' ACTION ITEM: Remove old Curator specific CCC categories from FlyBase implementation.  In their place, add new  CCC cateogries: CCC assay terms, CCC cellular components, CCC verbs.  Also add tables and figures category.
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'''11/20/09''' ACTION ITEM: Add Molecular Function binding/physical interaction categories to FlyBase implementation.
  
  
 
Back to [[Gene Ontology]]
 
Back to [[Gene Ontology]]
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[[Category:Curation]]

Latest revision as of 18:02, 21 July 2011

GO Curation Pipeline at FlyBase

Textpresso for Cellular Component Curation for FlyBase

Basic outline: use FlyBase gene association file to sort search results based upon presence/absence in GAF and presence/absence of CC annotation

May also search using a priority gene list


History

    Incoming papers are flagged as having new or comprehensive GO data.  It's, therefore, not easy to identify  
    previously curated papers that would be classed as such for an SVM.


11/20/09 ACTION ITEM: Remove old Curator specific CCC categories from FlyBase implementation. In their place, add new CCC cateogries: CCC assay terms, CCC cellular components, CCC verbs. Also add tables and figures category.

11/20/09 ACTION ITEM: Add Molecular Function binding/physical interaction categories to FlyBase implementation.


Back to Gene Ontology