Difference between revisions of "First-pass schedule, instructions, automation"

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|WormBase re-evalutation||6/22-7/5: IWM||(?)
 
|WormBase re-evalutation||6/22-7/5: IWM||(?)
 
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=[http://www.wormbase.org/wiki/index.php/%3DAutomation_progress%3D Automation progress]=
 
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==[http://goldturtle.caltech.edu/wcat/ Textpresso's Automation Explanation and Schedule  http://goldturtle.caltech.edu/wcat/]==
 
  
 
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=First-Pass a paper=
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=[http://www.wormbase.org/wiki/index.php/%3DAutomation_progress%3D Automation progress]=
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Access papers on the [http://tazendra.caltech.edu/~postgres/cgi-bin/wbpaper_editor.cgi WBPaperEditor] page
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*[http://goldturtle.caltech.edu/wcat/ Textpresso's Automation Explanation and Schedule  http://goldturtle.caltech.edu/wcat/]
  
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==Pick a paper and access the curation form==
 
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* Go to http://tazendra.caltech.edu/~postgres/cgi-bin/wbpaper_editor.cgi
 
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* Choose your name
 
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* Scroll down the page and select '''"Not Curated Plus Textpresso!"''' ''The body of these papers have passed through Textpresso and should report all found datatypes in the automated pipeline in the appropriate fields.''
 
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* Scroll/Page down to a paper and select "Curate!" 
 
  
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=First-pass forms=
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''Alternatively''
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*[http://www.wormbase.org/wiki/index.php/Texpresso/Author/Curator_interim_form New textpresso/author/curator table]
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* Access the curation.cgi from the WBPaperID page itself
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**[http://tazendra.caltech.edu/~postgres/cgi-bin/curator_first_pass.cgi Example of new curator first-pass curation.cgi]
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* Select the WBPaperID from left column to take you to the paper page-- '''ONLY SELECT PAPERS FROM WBPaper0030000 AND LATER'''
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*[http://www.wormbase.org/wiki/index.php/First-pass_data_types_explained  Old curator first-pass table]
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* Select first-pass curate
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*[[Author first-pass form]]
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''Note: the paper pdf can be accessed from the paper page along with supplemental materials.''
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*[[Genetics Author pass form]]
  
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Either action takes you to the curation.cgi (SEE BELOW)
 
  
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==New firstpass [http://tazendra.caltech.edu/~postgres/cgi-bin/curator_first_pass.cgi curation.cgi]==
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=Instructions for curators=
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==[http://www.wormbase.org/wiki/index.php/Instructions_for_curators Instructions for curators for the new form]==
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===[http://www.wormbase.org/wiki/index.php/Instructions_for_curators Overview for curators (for the new form)]===
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==[[Texpresso/Author/Curator interim form]]==
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===Adding new gene paper connections===
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[http://www.wormbase.org/wiki/index.php/Texpresso/Author/Curator_interim_form Link to an explanation of the data types on the new curator form that combines data flagging from all three sources.]
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You can add gene paper connections through the WBPaper editor page.<br>  Search directly for the paper on this page or access the paper by hitting "DISPLAY ALL!" and choosing the paper from the left column link.  You will be taken to a summary page for the paper. At the bottom of the page confirm or add new genes associated with that paper.
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==Old First-pass data types==
 
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[http://www.wormbase.org/wiki/index.php/First-pass_data_types_explained Link to an explanation of the data types as they existed on the old curator firstpass form]
 
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==Adding new gene paper connections==
 
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You can add gene paper connections through the WBPaper editor page.<br>  You can search directly for the paper on this page or you can access the paper by hitting "DISPLAY ALL!" and choosing the paper from the left column link.  You will be taken to a summary page for the paper. At the bottom of the page confirm or add new genes associated with that paper.
 
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=FP curator comments for St.Louis and Sanger structure correction data type=
 
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[http://www.wormbase.org/wiki/index.php/FP_curator_comments_for_St.Louis_and_Sanger_structure_correction_data_type link to St.Louis and Sanger structure correction data type curator comments]
 
  
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=Author first-pass form=
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=Postgres data for individual data types=
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[[project page for author first pass form]]
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*[http://www.wormbase.org/wiki/index.php/FP_curator_comments_for_St.Louis_and_Sanger_structure_correction_data_type St.Louis and Sanger structure correction data type curator comments]
  
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=Genetics author first-pass form=
 
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[http://www.wormbase.org/wiki/index.php/Genetics_Author_pass_form Link to the project page for GENETICS author data submission]
 
  
  
 
[[User:Kyook|kjy]] 19:43, 9 February 2009 (EST)
 
[[User:Kyook|kjy]] 19:43, 9 February 2009 (EST)

Revision as of 17:14, 22 June 2009

[back]

First-Pass Rotation

First-Pass Curator Round 1 Round 2
Karen 2/16-3/1 7/6-7/19
Ranjana 3/2-3/15 7/20-8/1
Raymond 3/16-3/29 8/3-8/16
Jolene 3/30-4/12: New forms active 8/17-8/30
Gary 4/13-4/26: Author forms sent out 8/31-9-13
Xiaodong 4/27-5/10: Author feedback coming in 9/14-9/27
Erich 5/11-5/24 9/28-10/11
Wen 5/25- 6/7 10/12-10/35
Kimberly 6/8-6/21 10/26-11/8
WormBase re-evalutation 6/22-7/5: IWM (?)

Automation progress


First-pass forms


Instructions for curators

Overview for curators (for the new form)

Adding new gene paper connections

You can add gene paper connections through the WBPaper editor page.
Search directly for the paper on this page or access the paper by hitting "DISPLAY ALL!" and choosing the paper from the left column link. You will be taken to a summary page for the paper. At the bottom of the page confirm or add new genes associated with that paper.


Postgres data for individual data types


kjy 19:43, 9 February 2009 (EST)

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