Difference between revisions of "First-pass schedule, instructions, automation"

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[[http://www.wormbase.org/wiki/index.php?title=Caltech_documentation&action=submit back]]
 
[[http://www.wormbase.org/wiki/index.php?title=Caltech_documentation&action=submit back]]
 
 
=[http://www.wormbase.org/wiki/index.php/Genetics_Author_pass_form Genetics author first pass form]=
 
[http://www.wormbase.org/wiki/index.php/Genetics_Author_pass_form Link to the project page for GENETICS author data submission]
 
  
 
=First-Pass Rotation=
 
=First-Pass Rotation=
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=[[FP curator comments for St.Louis and Sanger structure correction data type]]=
 
=[[FP curator comments for St.Louis and Sanger structure correction data type]]=
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=[http://www.wormbase.org/wiki/index.php/Genetics_Author_pass_form Genetics author first pass form]=
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[http://www.wormbase.org/wiki/index.php/Genetics_Author_pass_form Link to the project page for GENETICS author data submission]
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[[User:Kyook|kjy]] 19:43, 9 February 2009 (EST)
 
[[User:Kyook|kjy]] 19:43, 9 February 2009 (EST)

Revision as of 21:08, 6 May 2009

[back]

First-Pass Rotation

First-Pass Curator Two-week period Landmarks
Karen 2/16-3/1
Ranjana 3/2-3/15
Raymond 3/16-3/29
Jolene 3/30-4/12 New forms active
Gary 4/13-4/26 Author forms sent out
Xiaodong 4/27-5/10 Author feedback coming in
Erich 5/11-5/24
Wen 5/25- 6/7
Kimberly 6/8-6/21

Automation progress

Texpresso's Automation Explanation and Schedule http://goldturtle.caltech.edu/wcat/


First-Pass a paper

Access papers on the WBPaperEditor page

Pick a paper and access the curation form

  • Go to http://tazendra.caltech.edu/~postgres/cgi-bin/wbpaper_editor.cgi
  • Choose your name
  • Scroll down the page and select "Not Curated Plus Textpresso!" The body of these papers have passed through Textpresso and should report all found datatypes in the automated pipeline in the appropriate fields.
  • Scroll/Page down to a paper and select "Curate!"


Alternatively

  • Access the curation.cgi from the WBPaperID page itself
  • Select the WBPaperID from left column to take you to the paper page-- ONLY SELECT PAPERS FROM WBPaper0030000 AND LATER
  • Select first-pass curate

Note: the paper pdf can be accessed from the paper page along with supplemental materials.

Either action takes you to the curation.cgi (SEE BELOW)

New firstpass curation.cgi

Instructions for curators for the new form

Texpresso/Author/Curator interim form

Link to an explanation of the data types on the new curator form that combines data flagging from all three sources.

Old First-pass data types

Link to an explanation of the data types as they existed on the old curator firstpass form

Adding new gene paper connections

You can add gene paper connections through the WBPaper editor page.
You can search directly for the paper on this page or you can access the paper by hitting "DISPLAY ALL!" and choosing the paper from the left column link. You will be taken to a summary page for the paper. At the bottom of the page confirm or add new genes associated with that paper.


FP curator comments for St.Louis and Sanger structure correction data type

Genetics author first pass form

Link to the project page for GENETICS author data submission


kjy 19:43, 9 February 2009 (EST)