Difference between revisions of "Feature WishList"
(Created page with '''This is a running list of proposed features at WormBase'' ===Human disease=== We need deeper integration with human diseases. This is a benefit both to people who use C. ele…') |
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===Human disease=== | ===Human disease=== | ||
− | We need | + | We need broader integration of human diseases. This is a benefit both to people who use C. elegans as a model system (most grants at least true to touch on the relevance of given projects with human disease) as well as those looking to the system to help understand orthologous genes implicated in disease. |
+ | Requirements: | ||
+ | * should be possible to search by disease IDs and common names | ||
+ | * genes with human orthologs implicated in disease should be clearly noted, probably in the Overview widget. | ||
+ | * Should link back to OMIM | ||
+ | |||
+ | Status: | ||
+ | * OMIM IDs in database; need brief descriptions? | ||
+ | * Is there an OMIM web service we can consume? | ||
=== Ontologies === | === Ontologies === |
Revision as of 18:38, 5 October 2011
This is a running list of proposed features at WormBase
Contents
Human disease
We need broader integration of human diseases. This is a benefit both to people who use C. elegans as a model system (most grants at least true to touch on the relevance of given projects with human disease) as well as those looking to the system to help understand orthologous genes implicated in disease.
Requirements:
- should be possible to search by disease IDs and common names
- genes with human orthologs implicated in disease should be clearly noted, probably in the Overview widget.
- Should link back to OMIM
Status:
- OMIM IDs in database; need brief descriptions?
- Is there an OMIM web service we can consume?
Ontologies
We don't too much with ontology other than display a list of associations for a given object. What else can we do? For example, on the gene page, we could expand the ontology section to show genes with similar patterns of enrichment. We might also consider integrate a tool like AmiGO to make it easier to browse ontologies.
Homology/Orthology
Variations
Mapping molecularly characterized variations against protein domains and cross referencing with phenotypes to infer domain/protein function.