Evidence Code Ontology
From WormBaseWiki
Contents
Overview
- The Evidence and Conclusion Ontology is used in WormBase to record evidence used for assertions in curation data models.
- The Evidence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278, and is proposed to eventually fully replace ?GO_code.
?ECO_term Model
?ECO_term Name UNIQUE ?Text Status UNIQUE Valid Obsolete Alt_id ?Text Definition UNIQUE ?Text Synonym Broad ?Text Exact ?Text Narrow ?Text Related ?Text Child ?ECO_term XREF Parent Parent ?ECO_term XREF Child Attribute_of GO_annotation ?GO_annotation XREF ECO_term Disease_model_annotation ?Disease_model_annotation XREF ECO_term Version UNIQUE Text
Other models affected for WS278
- Will replace ?GO_code with ?ECO_term in:
- ?GO_annotation
- ?Phenotype
- ?Disease_model_annotation (will eventually replace ?GO_code with ?ECO_term)
- Will remove ?GO_code in:
- ?Cell
Additional model cleanup? Are these tags being used at all?
- ?Gene - remove ?GO_term tag and associated info?
- ?Sequence - remove ?GO_term tag and associated info?
- ?CDS - remove ?GO_term tag and associated info?
- ?Transcript - remove ?GO_term tag and associated info?
Parsing Script for ?ECO_term Model
TO BE ADDED