Difference between revisions of "Evidence Code Ontology"
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= Other models affected in future releases = | = Other models affected in future releases = | ||
− | # ?Disease_model_annotation | + | # ?Disease_model_annotation (replace ?GO_code with ?ECO_codwe) |
# ?Phenotype (need to confirm with Chris) | # ?Phenotype (need to confirm with Chris) | ||
Revision as of 19:17, 21 April 2020
Contents
Overview
- The Evidence and Conclusion Ontology is used in WormBase to record evidence used for assertions in curation data models.
- The Evidence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278, and is proposed to replace ?GO_code.
?ECO_term Model
?ECO_term Name UNIQUE ?Text Status UNIQUE Valid Obsolete Alt_id ?Text Definition UNIQUE ?Text Synonym Broad ?Text Exact ?Text Narrow ?Text Related ?Text Child Instance ?ECO_term XREF Instance_of Parent Instance_of ?ECO_term XREF Instance Attribute_of GO_annotation ?GO_annotation XREF ?ECO_code Index Ancestor ?ECO_term XREF Descendant Descendant ?ECO_term XREF Ancestor Version UNIQUE Text
Other models affected for WS278
- Will replace ?GO_code with ?ECO_code in:
- ?GO_annotation
- Will remove ?GO_code in:
- ?Cell
Other models affected in future releases
- ?Disease_model_annotation (replace ?GO_code with ?ECO_codwe)
- ?Phenotype (need to confirm with Chris)
Additional model cleanup? Are these tags being used at all?
- ?Gene - remove ?GO_term tag and associated info?
- ?Sequence - remove ?GO_term tag and associated info?
- ?CDS - remove ?GO_term tag and associated info?
- ?Transcript - remove ?GO_term tag and associated info?
Parsing Script for ?ECO_term Model
TO BE ADDED