Difference between revisions of "Evidence Code Ontology"
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*[https://github.com/evidenceontology/evidenceontology The Evidence and Conclusion Ontology] is used in WormBase to record evidence used for assertions in curation data models. | *[https://github.com/evidenceontology/evidenceontology The Evidence and Conclusion Ontology] is used in WormBase to record evidence used for assertions in curation data models. | ||
− | *The Evidence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278. | + | *The Evidence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278, and is proposed to replace ?GO_code. |
= ?ECO_term Model = | = ?ECO_term Model = | ||
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Version UNIQUE Text | Version UNIQUE Text | ||
− | = | + | = Other models affected = |
− | + | * Will need to replace ?GO_code with ?ECO_code | |
− | * | + | # ?GO_annotation |
− | + | # ?Disease_model_annotation (confirm with Ranjana) | |
+ | # ?Cell (confirm with Raymond) - also replace ?AO_code with ?ECO_code? | ||
+ | # ?Phenotype (confirm with Chris) | ||
− | + | = Additional model cleanup? Are these tags being used at all? = | |
− | + | # ?Gene - remove ?GO_term tag and associated info? | |
+ | # ?Sequence - remove ?GO_term tag and associated info? | ||
+ | # ?CDS - remove ?GO_term tag and associated info? | ||
+ | # ?Transcript - remove ?GO_term tag and associated info? | ||
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− | + | = Parsing Script for ?ECO_term Model = | |
− | + | '''TO BE ADDED''' | |
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Revision as of 18:02, 20 April 2020
Contents
Overview
- The Evidence and Conclusion Ontology is used in WormBase to record evidence used for assertions in curation data models.
- The Evidence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278, and is proposed to replace ?GO_code.
?ECO_term Model
?ECO_term Name UNIQUE ?Text Status UNIQUE Valid Obsolete Alt_id ?Text Definition UNIQUE ?Text Synonym Broad ?Text Exact ?Text Narrow ?Text Related ?Text Child Instance ?ECO_term XREF Instance_of Parent Instance_of ?ECO_term XREF Instance Attribute_of GO_annotation ?GO_annotation XREF ?ECO_code Index Ancestor ?ECO_term XREF Descendant Descendant ?ECO_term XREF Ancestor Version UNIQUE Text
Other models affected
- Will need to replace ?GO_code with ?ECO_code
- ?GO_annotation
- ?Disease_model_annotation (confirm with Ranjana)
- ?Cell (confirm with Raymond) - also replace ?AO_code with ?ECO_code?
- ?Phenotype (confirm with Chris)
Additional model cleanup? Are these tags being used at all?
- ?Gene - remove ?GO_term tag and associated info?
- ?Sequence - remove ?GO_term tag and associated info?
- ?CDS - remove ?GO_term tag and associated info?
- ?Transcript - remove ?GO_term tag and associated info?
Parsing Script for ?ECO_term Model
TO BE ADDED