Difference between revisions of "Evidence Code Ontology"

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Line 17: Line 17:
 
           Child ?ECO_term XREF Parent
 
           Child ?ECO_term XREF Parent
 
           Parent ?ECO_term XREF Child
 
           Parent ?ECO_term XREF Child
          Attribute_of GO_annotation ?GO_annotation XREF ECO_term
 
                        Disease_model_annotation ?Disease_model_annotation XREF ECO_term
 
 
           Version UNIQUE Text
 
           Version UNIQUE Text
  

Latest revision as of 15:32, 15 May 2020

Overview

  • The Evidence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278, and is proposed to eventually fully replace ?GO_code.

?ECO_term Model

 ?ECO_term Name UNIQUE ?Text
          Status UNIQUE Valid
                        Obsolete
          Alt_id ?Text
          Definition UNIQUE ?Text
          Synonym Broad ?Text
                  Exact ?Text
                  Narrow ?Text
                  Related ?Text
          Child ?ECO_term XREF Parent
          Parent ?ECO_term XREF Child
          Version UNIQUE Text

Other models affected for WS278

  • Will replace ?GO_code with ?ECO_term in:
    • ?GO_annotation
    • ?Phenotype
    • ?Disease_model_annotation (will eventually replace ?GO_code with ?ECO_term)
  • Will remove ?GO_code in:
    • ?Cell

Additional model cleanup? Are these tags being used at all?

  1. ?Gene - remove ?GO_term tag and associated info?
  2. ?Sequence - remove ?GO_term tag and associated info?
  3. ?CDS - remove ?GO_term tag and associated info?
  4. ?Transcript - remove ?GO_term tag and associated info?


Parsing Script for ?ECO_term Model

TO BE ADDED